view emboss_wobble.xml @ 19:d0847fe9b443 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 18de4aa9ba00124b1b3e3afe14219e46931e58a9"

<tool id="EMBOSS: wobble108" name="wobble" version="@VERSION@.1">
  <description>Wobble base plot</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements" />
  <command>perl '$__tool_directory__/emboss_single_outputfile_wrapper.pl' wobble -sequence '$input1' -graph png -goutfile '$ofile1' -outfile '$ofile2' -window $window -bases '$bases' -auto</command>
  <inputs>
    <param name="input1" type="data" format="fasta" label="Sequence" />
    <param name="window" type="integer" value="30" label="Window size, in codons" />
    <param name="bases" type="text" value="GC" label="Bases used" />
  </inputs>
  <outputs>
    <data name="ofile1" format="png" />
    <data name="ofile2" format="wobble" />
  </outputs>
  <tests>
    <test>
      <param name="input1" value="2.fasta"/>
      <param name="window" value="30"/>
      <param name="bases" value="GC"/>
      <output name="ofile2" file="emboss_wobble_out.wobble"/>
    </test>
  </tests>
  <help>
.. class:: warningmark

The input dataset needs to be sequences.

-----

    You can view the original documentation here_.

    .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/wobble.html
  </help>
  <expand macro="citations" />
</tool>