annotate emboss_wobble.xml @ 19:d0847fe9b443 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 18de4aa9ba00124b1b3e3afe14219e46931e58a9"
author iuc
date Fri, 09 Jul 2021 18:35:00 +0000
parents 27c43fb015f0
children 21a9fb508031
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1 <tool id="EMBOSS: wobble108" name="wobble" version="@VERSION@.1">
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2 <description>Wobble base plot</description>
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3 <macros>
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4 <import>macros.xml</import>
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5 </macros>
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6 <expand macro="requirements" />
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7 <command>perl '$__tool_directory__/emboss_single_outputfile_wrapper.pl' wobble -sequence '$input1' -graph png -goutfile '$ofile1' -outfile '$ofile2' -window $window -bases '$bases' -auto</command>
0e2484b6829b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit b583bbeb8fc90cd4b1e987a56982e7cf4aed1a68
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8 <inputs>
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9 <param name="input1" type="data" format="fasta" label="Sequence" />
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10 <param name="window" type="integer" value="30" label="Window size, in codons" />
0e2484b6829b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit b583bbeb8fc90cd4b1e987a56982e7cf4aed1a68
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11 <param name="bases" type="text" value="GC" label="Bases used" />
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12 </inputs>
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13 <outputs>
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14 <data name="ofile1" format="png" />
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15 <data name="ofile2" format="wobble" />
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16 </outputs>
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17 <tests>
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18 <test>
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19 <param name="input1" value="2.fasta"/>
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20 <param name="window" value="30"/>
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21 <param name="bases" value="GC"/>
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22 <output name="ofile2" file="emboss_wobble_out.wobble"/>
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23 </test>
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24 </tests>
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25 <help>
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26 .. class:: warningmark
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28 The input dataset needs to be sequences.
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30 -----
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32 You can view the original documentation here_.
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34 .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/wobble.html
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35 </help>
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36 <expand macro="citations" />
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37 </tool>