Mercurial > repos > devteam > emboss_5
view test-data/emboss_compseq_out.compseq @ 2:3e33c6853fb2
Added tool_dependencies.xml
| author | greg <greg@bx.psu.edu> |
|---|---|
| date | Tue, 03 Jul 2012 14:31:50 -0400 |
| parents | a74a91f0ca4a |
| children |
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# # Output from 'compseq' # # The Expected frequencies are calculated on the (false) assumption that every # word has equal frequency. # # The input sequences are: # Sequence Word size 2 Total count 560 # # Word Obs Count Obs Frequency Exp Frequency Obs/Exp Frequency # AA 40 0.0714286 0.0625000 1.1428571 AC 27 0.0482143 0.0625000 0.7714286 AG 26 0.0464286 0.0625000 0.7428571 AT 41 0.0732143 0.0625000 1.1714286 CA 26 0.0464286 0.0625000 0.7428571 CC 24 0.0428571 0.0625000 0.6857143 CG 15 0.0267857 0.0625000 0.4285714 CT 41 0.0732143 0.0625000 1.1714286 GA 19 0.0339286 0.0625000 0.5428571 GC 17 0.0303571 0.0625000 0.4857143 GG 19 0.0339286 0.0625000 0.5428571 GT 43 0.0767857 0.0625000 1.2285714 TA 50 0.0892857 0.0625000 1.4285714 TC 38 0.0678571 0.0625000 1.0857143 TG 37 0.0660714 0.0625000 1.0571429 TT 97 0.1732143 0.0625000 2.7714286 Other 0 0.0000000 0.0000000 10000000000.0000000