Mercurial > repos > devteam > emboss_5
view emboss_cpgplot.xml @ 16:33381b9c268c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 431486be049407b094d495ae4a68bf76d27fa522
author | iuc |
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date | Mon, 28 Jan 2019 14:49:47 -0500 |
parents | 27c43fb015f0 |
children | 21a9fb508031 |
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<tool id="EMBOSS: cpgplot15" name="cpgplot" version="@VERSION@"> <description>Plot CpG rich areas</description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements" /> <code file="emboss_format_corrector.py" /> <command>perl '$__tool_directory__/emboss_cpgplot_wrapper.pl' cpgplot -sequence '$input1' -window $window -minlen $minlen -minpc $minpc -outfile '$outfile' -graph png -goutfile '$goutfile' -outfeat '$outfeat' -minoe $minoe -auto</command> <inputs> <param name="input1" type="data" format="data" label="On query" /> <param name="window" type="integer" value="100" label="Window size" /> <param name="minlen" type="integer" value="200" label="Minimum length" /> <param name="minoe" type="float" value="0.6" label="Minimum average observed to expected ratio" /> <param name="minpc" type="float" value="50.0" label="Minimum average percentage of G plus C" /> </inputs> <outputs> <data name="outfile" format="cpgplot" /> <data name="goutfile" format="png" /> <data name="outfeat" format="gff" /> </outputs> <help> You can view the original documentation here_. .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/cpgplot.html </help> <expand macro="citations" /> </tool>