view emboss_cpgplot.xml @ 14:27c43fb015f0 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 9844cae766e7471d9fa6b2e8356e5194e77f6753

<tool id="EMBOSS: cpgplot15" name="cpgplot" version="@VERSION@">
  <description>Plot CpG rich areas</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements" />
  <code file="emboss_format_corrector.py" />
  <command>perl '$__tool_directory__/emboss_cpgplot_wrapper.pl' cpgplot -sequence '$input1' -window $window -minlen $minlen -minpc $minpc -outfile '$outfile' -graph png -goutfile '$goutfile' -outfeat '$outfeat' -minoe $minoe -auto</command>
  <inputs>
    <param name="input1" type="data" format="data" label="On query" />
    <param name="window" type="integer" value="100" label="Window size" />
    <param name="minlen" type="integer" value="200" label="Minimum length" />
    <param name="minoe" type="float" value="0.6" label="Minimum average observed to expected ratio" />
    <param name="minpc" type="float" value="50.0" label="Minimum average percentage of G plus C" />
  </inputs>
  <outputs>
    <data name="outfile" format="cpgplot" />
    <data name="goutfile" format="png" />
    <data name="outfeat" format="gff" />
  </outputs>
  <help>
    You can view the original documentation here_.

    .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/cpgplot.html
  </help>
  <expand macro="citations" />
</tool>