Mercurial > repos > devteam > data_manager_twobit_builder
diff data_manager/twobit_builder.xml @ 2:c9896bb1f03c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_twobit_builder commit 8652f36a3a3838dca989426961561e81432acf4f
author | iuc |
---|---|
date | Tue, 04 Apr 2017 17:54:54 -0400 |
parents | 298d15849a14 |
children | e697ffc1197e |
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--- a/data_manager/twobit_builder.xml Thu Jan 19 11:45:29 2017 -0500 +++ b/data_manager/twobit_builder.xml Tue Apr 04 17:54:54 2017 -0400 @@ -3,14 +3,19 @@ <requirement type="package" version="324">ucsc-fatotwobit</requirement> </requirements> <description>builder</description> - <command interpreter="python">twobit_builder.py "${out_file}" --fasta_filename "${all_fasta_source.fields.path}" --fasta_dbkey "${all_fasta_source.fields.dbkey}" --fasta_description "${all_fasta_source.fields.name}"</command> + <command detect_errors="exit_code"><![CDATA[ + python '$__tool_directory__/twobit_builder.py' + '${out_file}' + --fasta_filename '${all_fasta_source.fields.path}' + --fasta_dbkey '${all_fasta_source.fields.dbkey}' + --fasta_description '${all_fasta_source.fields.name}' + ]]></command> <inputs> <param name="all_fasta_source" type="select" label="Source FASTA Sequence"> <options from_data_table="all_fasta"/> </param> - <param type="text" name="sequence_name" value="" label="Name of sequence" /> - <param type="text" name="sequence_id" value="" label="ID for sequence" /> - + <param name="sequence_name" type="text" value="" label="Name of sequence" /> + <param name="sequence_id" type="text" value="" label="ID for sequence" /> </inputs> <outputs> <data name="out_file" format="data_manager_json"/> @@ -25,11 +30,9 @@ </tests> <help> - .. class:: infomark -**Notice:** If you leave name, description, or id blank, it will be generated automatically. - +**Notice:** If you leave name, description, or id blank, it will be generated automatically. </help> </tool>