Mercurial > repos > devteam > data_manager_picard_index_builder
annotate data_manager/picard_index_builder.xml @ 3:0663d25e619c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_picard_index_builder commit 8652f36a3a3838dca989426961561e81432acf4f
author | iuc |
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date | Tue, 04 Apr 2017 17:52:40 -0400 |
parents | 9a024421602a |
children | acaa6719a478 |
rev | line source |
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0663d25e619c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_picard_index_builder commit 8652f36a3a3838dca989426961561e81432acf4f
iuc
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changeset
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1 <tool id="picard_index_builder_data_manager" name="Picard index" tool_type="manage_data" version="2.7.1"> |
0 | 2 <description>builder</description> |
3 <requirements> | |
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0663d25e619c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_picard_index_builder commit 8652f36a3a3838dca989426961561e81432acf4f
iuc
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changeset
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4 <requirement type="package" version="2.7.1">picard</requirement> |
0 | 5 </requirements> |
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0663d25e619c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_picard_index_builder commit 8652f36a3a3838dca989426961561e81432acf4f
iuc
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0
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changeset
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6 <command detect_errors="exit_code"><![CDATA[ |
0663d25e619c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_picard_index_builder commit 8652f36a3a3838dca989426961561e81432acf4f
iuc
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changeset
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7 python '$__tool_directory__/picard_index_builder.py' |
0663d25e619c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_picard_index_builder commit 8652f36a3a3838dca989426961561e81432acf4f
iuc
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changeset
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8 '${out_file}' |
0663d25e619c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_picard_index_builder commit 8652f36a3a3838dca989426961561e81432acf4f
iuc
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changeset
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9 --fasta_filename '${all_fasta_source.fields.path}' |
0663d25e619c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_picard_index_builder commit 8652f36a3a3838dca989426961561e81432acf4f
iuc
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changeset
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10 --fasta_dbkey '${all_fasta_source.fields.dbkey}' |
0663d25e619c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_picard_index_builder commit 8652f36a3a3838dca989426961561e81432acf4f
iuc
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0
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changeset
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11 --fasta_description '${all_fasta_source.fields.name}' |
0663d25e619c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_picard_index_builder commit 8652f36a3a3838dca989426961561e81432acf4f
iuc
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0
diff
changeset
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12 --data_table_name picard_indexes |
0663d25e619c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_picard_index_builder commit 8652f36a3a3838dca989426961561e81432acf4f
iuc
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0
diff
changeset
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13 ]]></command> |
0 | 14 <inputs> |
15 <param name="all_fasta_source" type="select" label="Source FASTA Sequence"> | |
16 <options from_data_table="all_fasta"/> | |
17 </param> | |
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0663d25e619c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_picard_index_builder commit 8652f36a3a3838dca989426961561e81432acf4f
iuc
parents:
0
diff
changeset
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18 <param name="sequence_name" type="text" value="" label="Name of sequence" /> |
0663d25e619c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_picard_index_builder commit 8652f36a3a3838dca989426961561e81432acf4f
iuc
parents:
0
diff
changeset
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19 <param name="sequence_id" type="text" value="" label="ID for sequence" /> |
0 | 20 </inputs> |
21 <outputs> | |
22 <data name="out_file" format="data_manager_json"/> | |
23 </outputs> | |
24 | |
25 <help> | |
26 .. class:: infomark | |
27 | |
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0663d25e619c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_picard_index_builder commit 8652f36a3a3838dca989426961561e81432acf4f
iuc
parents:
0
diff
changeset
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28 **Notice:** If you leave name, description, or id blank, it will be generated automatically. |
0 | 29 </help> |
30 </tool> |