Mercurial > repos > devteam > data_manager_build_kraken_database

changeset 2:cdef63d8a141 draft

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Uploaded
author devteam
date Mon, 27 Apr 2015 16:13:06 -0400
parents 9e4d72083f9f
children 404ba485ec01
files data_manager/kraken_database_builder.xml
diffstat 1 files changed, 3 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/kraken_database_builder.xml	Thu Apr 23 09:57:51 2015 -0400
+++ b/data_manager/kraken_database_builder.xml	Mon Apr 27 16:13:06 2015 -0400
@@ -16,7 +16,9 @@
         mkdir kraken-database && cd kraken-database &&
         kraken-build --threads \${GALAXY_SLOTS:-1} --download-taxonomy --db "${database_name}" &&
         #for $library in $library_list:
-            kraken-build --threads \${GALAXY_SLOTS:-1} --download-library $library --db "${database_name}"  &&
+            #if str($library) != 'None':
+                kraken-build --threads \${GALAXY_SLOTS:-1} --download-library $library --db "${database_name}"  &&
+            #end if
         #end for
         #for $fasta in $input_fasta:
             kraken-build --threads \${GALAXY_SLOTS:-1} --db "${database_name}" --add-to-library "$fasta"  &&