Mercurial > repos > devteam > data_manager_bowtie2_index_builder
changeset 3:49331eedb1c5 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_bowtie2_index_builder commit c54b039220cc3d1767a424b6ae76852d40e67437
| author | devteam |
|---|---|
| date | Mon, 16 Nov 2015 15:12:06 -0500 |
| parents | 8de13c28d92e |
| children | c85369954c54 |
| files | data_manager/bowtie2_index_builder.xml data_manager_conf.xml tool_dependencies.xml |
| diffstat | 3 files changed, 5 insertions(+), 5 deletions(-) [+] |
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--- a/data_manager/bowtie2_index_builder.xml Tue Oct 13 10:17:27 2015 -0400 +++ b/data_manager/bowtie2_index_builder.xml Mon Nov 16 15:12:06 2015 -0500 @@ -1,7 +1,7 @@ -<tool id="bowtie2_index_builder_data_manager" name="Bowtie2 index" tool_type="manage_data" version="0.0.2"> +<tool id="bowtie2_index_builder_data_manager" name="Bowtie2 index" tool_type="manage_data" version="2.2.6"> <description>builder</description> <requirements> - <requirement type="package" version="2.2.4">bowtie2</requirement> + <requirement type="package" version="2.2.6">bowtie2</requirement> </requirements> <command interpreter="python">bowtie2_index_builder.py "${out_file}" --fasta_filename "${all_fasta_source.fields.path}" --fasta_dbkey "${all_fasta_source.fields.dbkey}" --fasta_description "${all_fasta_source.fields.name}" --data_table_name "bowtie2_indexes" ${tophat2}</command> <stdio>
--- a/data_manager_conf.xml Tue Oct 13 10:17:27 2015 -0400 +++ b/data_manager_conf.xml Mon Nov 16 15:12:06 2015 -0500 @@ -1,7 +1,7 @@ <?xml version="1.0"?> <data_managers> - <data_manager tool_file="data_manager/bowtie2_index_builder.xml" id="bowtie2_index_builder" version="0.0.2"> + <data_manager tool_file="data_manager/bowtie2_index_builder.xml" id="bowtie2_index_builder" version="2.2.6"> <data_table name="bowtie2_indexes"> <output> <column name="value" />
--- a/tool_dependencies.xml Tue Oct 13 10:17:27 2015 -0400 +++ b/tool_dependencies.xml Mon Nov 16 15:12:06 2015 -0500 @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool_dependency> - <package name="bowtie2" version="2.2.4"> - <repository changeset_revision="91b1c3b55eec" name="package_bowtie_2_2_4" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <package name="bowtie2" version="2.2.6"> + <repository changeset_revision="d227341ad20f" name="package_bowtie_2_2_6" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> </tool_dependency>