Mercurial > repos > devteam > data_manager_bowtie2_index_builder

diff tool_data_table_conf.xml.sample @ 2:8de13c28d92e draft

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planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
author devteam
date Tue, 13 Oct 2015 10:17:27 -0400
parents eec64de5f7fb
children
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--- a/tool_data_table_conf.xml.sample	Thu Mar 19 10:24:37 2015 -0400
+++ b/tool_data_table_conf.xml.sample	Tue Oct 13 10:17:27 2015 -0400
@@ -1,8 +1,18 @@
 <!-- Use the file tool_data_table_conf.xml.oldlocstyle if you don't want to update your loc files as changed in revision 4550:535d276c92bc-->
 <tables>
+    <!-- Locations of all fasta files under genome directory -->
+    <table name="all_fasta" comment_char="#">
+        <columns>value, dbkey, name, path</columns>
+        <file path="tool-data/all_fasta.loc" />
+    </table>
     <!-- Locations of indexes in the Bowtie2 mapper format -->
     <table name="bowtie2_indexes" comment_char="#">
         <columns>value, dbkey, name, path</columns>
         <file path="tool-data/bowtie2_indices.loc" />
     </table>
+    <!-- Locations of indexes in the Bowtie2 mapper format for TopHat2 to use -->
+    <table name="tophat2_indexes" comment_char="#">
+        <columns>value, dbkey, name, path</columns>
+        <file path="tool-data/tophat2_indices.loc" />
+    </table>
 </tables>