Mercurial > repos > devteam > cuffnorm
changeset 6:8701ca0f10fa draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/cufflinks/cuffnorm commit 80b06e80066b32ad53ed418628992f056444256f
| author | iuc |
|---|---|
| date | Sat, 05 Oct 2024 11:15:24 +0000 |
| parents | 5e3670f94019 |
| children | |
| files | cuff_macros.xml cuffnorm_wrapper.xml |
| diffstat | 2 files changed, 8 insertions(+), 7 deletions(-) [+] |
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--- a/cuff_macros.xml Mon Jul 06 18:19:36 2020 +0000 +++ b/cuff_macros.xml Sat Oct 05 11:15:24 2024 +0000 @@ -1,9 +1,10 @@ <macros> - <token name="@VERSION@">2.2.1</token> + <token name="@TOOL_VERSION@">2.2.1</token> + <token name="@PROFILE@">23.1</token> <xml name="requirements"> <requirements> - <requirement type="package" version="2.2.1">cufflinks</requirement> + <requirement type="package" version="@TOOL_VERSION@">cufflinks</requirement> <yield /> </requirements> </xml>
--- a/cuffnorm_wrapper.xml Mon Jul 06 18:19:36 2020 +0000 +++ b/cuffnorm_wrapper.xml Sat Oct 05 11:15:24 2024 +0000 @@ -1,4 +1,4 @@ -<tool id="cuffnorm" name="Cuffnorm" version="@VERSION@.3"> +<tool id="cuffnorm" name="Cuffnorm" version="@TOOL_VERSION@.4" profile="@PROFILE@"> <description>Create normalized expression levels</description> <macros> <import>cuff_macros.xml</import> @@ -96,19 +96,19 @@ <filter>(output_format == 'cuffdiff')</filter> </data> <!-- simple-table format--> - <data format="tabular" name="isoforms_attr" label="${tool.name} on ${on_string}: isoforms read group tracking" from_work_dir="isoforms.attr_table" > + <data format="tabular" name="isoforms_attr" label="${tool.name} on ${on_string}: isoforms read group tracking" from_work_dir="isoforms.attr_table" > <filter>(include_read_group_files == 'Yes')</filter> <filter>(output_format == 'simple-table')</filter> </data> - <data format="tabular" name="genes_read_group" label="${tool.name} on ${on_string}: genes read group tracking" from_work_dir="genes.attr_table" > + <data format="tabular" name="genes_attr" label="${tool.name} on ${on_string}: genes read group tracking" from_work_dir="genes.attr_table" > <filter>(include_read_group_files == 'Yes')</filter> <filter>(output_format == 'simple-table')</filter> </data> - <data format="tabular" name="cds_read_group" label="${tool.name} on ${on_string}: CDs read group tracking" from_work_dir="cds.attr_table" > + <data format="tabular" name="cds_attr" label="${tool.name} on ${on_string}: CDs read group tracking" from_work_dir="cds.attr_table" > <filter>(include_read_group_files == 'Yes')</filter> <filter>(output_format == 'simple-table')</filter> </data> - <data format="tabular" name="tss_groups_read_group" label="${tool.name} on ${on_string}: TSS groups read group tracking" from_work_dir="tss_groups.attr_table" > + <data format="tabular" name="tss_attr" label="${tool.name} on ${on_string}: TSS groups read group tracking" from_work_dir="tss_groups.attr_table" > <filter>(include_read_group_files == 'Yes')</filter> <filter>(output_format == 'simple-table')</filter> </data>