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view test-data/cuffcompare_out7.txt @ 4:806c27c97df7 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/cufflinks/cuffcompare commit a0b0845a9d1b3e7ecdeacd1e606133617e3918bd"
author iuc
date Tue, 16 Jun 2020 16:56:55 +0000
parents d0d26169cc2a
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# Cuffcompare v2.2.1 | Command line was:
#cuffcompare -o output -r /tmp/tmpt36dzh0b/files/7/5/1/dataset_75119a58-1488-40cb-bd1d-4e92052062f5.dat -R -e 100 -d 100 /tmp/tmpt36dzh0b/files/1/c/9/dataset_1c9fee4e-77d4-48eb-95ec-43841c5b63b1.dat /tmp/tmpt36dzh0b/files/0/d/d/dataset_0ddbc5aa-4094-447c-ae9e-f30a1f7af6a9.dat
#

#= Summary for dataset: /tmp/tmpt36dzh0b/files/1/c/9/dataset_1c9fee4e-77d4-48eb-95ec-43841c5b63b1.dat :
#     Query mRNAs :      50 in      50 loci  (0 multi-exon transcripts)
#            (0 multi-transcript loci, ~1.0 transcripts per locus)
# Reference mRNAs :       1 in       1 loci  (1 multi-exon)
# Super-loci w/ reference transcripts:        1
#--------------------|   Sn   |  Sp   |  fSn |  fSp  
        Base level: 	  2.2	  2.3	  - 	  - 
        Exon level: 	  0.0	  0.0	  0.0	  0.0
      Intron level: 	  0.0	 -nan	  0.0	 -nan
Intron chain level: 	  0.0	 -nan	  0.0	 -nan
  Transcript level: 	  0.0	  0.0	  0.0	  0.0
       Locus level: 	  0.0	  0.0	  0.0	  0.0

     Matching intron chains:       0
              Matching loci:       0

          Missed exons:       2/3	( 66.7%)
           Novel exons:      49/50	( 98.0%)
        Missed introns:       2/2	(100.0%)
           Missed loci:       0/1	(  0.0%)
            Novel loci:      49/50	( 98.0%)

#= Summary for dataset: /tmp/tmpt36dzh0b/files/0/d/d/dataset_0ddbc5aa-4094-447c-ae9e-f30a1f7af6a9.dat :
#     Query mRNAs :      50 in      50 loci  (0 multi-exon transcripts)
#            (0 multi-transcript loci, ~1.0 transcripts per locus)
# Reference mRNAs :       0 in       0 loci  (0 multi-exon)

 Total union super-loci across all input datasets: 87 
  (0 multi-transcript, ~1.1 transcripts per locus)