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comparison test-data/cuffcompare_out7.txt @ 4:806c27c97df7 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/cufflinks/cuffcompare commit a0b0845a9d1b3e7ecdeacd1e606133617e3918bd"
author iuc
date Tue, 16 Jun 2020 16:56:55 +0000
parents d0d26169cc2a
children
comparison
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3:5aac9b9d6f2a 4:806c27c97df7
1 # Cuffcompare v2.2.1 | Command line was: 1 # Cuffcompare v2.2.1 | Command line was:
2 #cuffcompare -o cc_output -r /tmp/tmpZ9KXPVfiles/000/dataset_3.dat -R -e 100 -d 100 ./input1 ./input2 2 #cuffcompare -o output -r /tmp/tmpt36dzh0b/files/7/5/1/dataset_75119a58-1488-40cb-bd1d-4e92052062f5.dat -R -e 100 -d 100 /tmp/tmpt36dzh0b/files/1/c/9/dataset_1c9fee4e-77d4-48eb-95ec-43841c5b63b1.dat /tmp/tmpt36dzh0b/files/0/d/d/dataset_0ddbc5aa-4094-447c-ae9e-f30a1f7af6a9.dat
3 # 3 #
4 4
5 #= Summary for dataset: ./input1 : 5 #= Summary for dataset: /tmp/tmpt36dzh0b/files/1/c/9/dataset_1c9fee4e-77d4-48eb-95ec-43841c5b63b1.dat :
6 # Query mRNAs : 50 in 50 loci (0 multi-exon transcripts) 6 # Query mRNAs : 50 in 50 loci (0 multi-exon transcripts)
7 # (0 multi-transcript loci, ~1.0 transcripts per locus) 7 # (0 multi-transcript loci, ~1.0 transcripts per locus)
8 # Reference mRNAs : 1 in 1 loci (1 multi-exon) 8 # Reference mRNAs : 1 in 1 loci (1 multi-exon)
9 # Super-loci w/ reference transcripts: 1 9 # Super-loci w/ reference transcripts: 1
10 #--------------------| Sn | Sp | fSn | fSp 10 #--------------------| Sn | Sp | fSn | fSp
22 Novel exons: 49/50 ( 98.0%) 22 Novel exons: 49/50 ( 98.0%)
23 Missed introns: 2/2 (100.0%) 23 Missed introns: 2/2 (100.0%)
24 Missed loci: 0/1 ( 0.0%) 24 Missed loci: 0/1 ( 0.0%)
25 Novel loci: 49/50 ( 98.0%) 25 Novel loci: 49/50 ( 98.0%)
26 26
27 #= Summary for dataset: ./input2 : 27 #= Summary for dataset: /tmp/tmpt36dzh0b/files/0/d/d/dataset_0ddbc5aa-4094-447c-ae9e-f30a1f7af6a9.dat :
28 # Query mRNAs : 50 in 50 loci (0 multi-exon transcripts) 28 # Query mRNAs : 50 in 50 loci (0 multi-exon transcripts)
29 # (0 multi-transcript loci, ~1.0 transcripts per locus) 29 # (0 multi-transcript loci, ~1.0 transcripts per locus)
30 # Reference mRNAs : 0 in 0 loci (0 multi-exon) 30 # Reference mRNAs : 0 in 0 loci (0 multi-exon)
31 31
32 Total union super-loci across all input datasets: 87 32 Total union super-loci across all input datasets: 87