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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/count_gff_features commit d242cab2b4e86bc8a16eeaee7e5dc0264e617170
author devteam
date Tue, 06 Jun 2017 18:37:39 -0400
parents 002a1e6ef8d9
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115bba486116 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/count_gff_features commit d242cab2b4e86bc8a16eeaee7e5dc0264e617170
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1 <tool id="count_gff_features" name="Count GFF Features" version="0.2">
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2 <description></description>
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3 <requirements>
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115bba486116 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/count_gff_features commit d242cab2b4e86bc8a16eeaee7e5dc0264e617170
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4 <requirement type="package" version="1.1.0">galaxy-ops</requirement>
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5 </requirements>
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115bba486116 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/count_gff_features commit d242cab2b4e86bc8a16eeaee7e5dc0264e617170
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6 <command><![CDATA[
115bba486116 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/count_gff_features commit d242cab2b4e86bc8a16eeaee7e5dc0264e617170
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7 python '$__tool_directory__/count_gff_features.py'
115bba486116 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/count_gff_features commit d242cab2b4e86bc8a16eeaee7e5dc0264e617170
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8 '$input' > '$output'
115bba486116 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/count_gff_features commit d242cab2b4e86bc8a16eeaee7e5dc0264e617170
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9 ]]>
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10 </command>
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11 <inputs>
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12 <param format="gff" name="input" type="data" label="GFF Dataset to Filter"/>
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13 </inputs>
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14 <outputs>
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15 <data format="txt" name="output"/>
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16 </outputs>
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17 <tests>
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18 <test>
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19 <param name="input" value="gff2bed_in2.gff"/>
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20 <output name="output" file="count_gff_features_out1.txt"/>
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21 </test>
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22 <test>
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23 <param name="input" value="gff_filter_by_feature_count_out1.gff"/>
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24 <output name="output" file="count_gff_features_out2.txt"/>
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25 </test>
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26 </tests>
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27 <help>
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28 Counts the number of features in a GFF dataset. GFF features are often spread across multiple lines; this tool counts the number of
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29 features in dataset rather than the number of lines.
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30 </help>
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31 </tool>