Mercurial > repos > devteam > compute_motif_frequencies_for_all_motifs

deletionHoptspot1	[A/C][G/T][A/G][A/G]GT
deletionHoptspot1rev	TG[A/G][A/G][G/T][A/C]
deletionHoptspot1comp	[G/T][A/C][C/T][C/T]CA
deletionHoptspot1revcomp	AC[C/T][C/T][A/C][G/T]
deletionHoptspot2	[C/T][C/T][C/T]TG
deletionHoptspot2rev	GT[C/T][C/T][C/T]
deletionHoptspot2comp	[A/G][A/G][A/G]AC
deletionHoptspot2revcomp	CA[A/G][A/G][A/G]
deletionHoptspot3	CAG[A/G]
deletionHoptspot3rev	[A/G]GAC
deletionHoptspot3comp	GTC[C/T]
deletionHoptspot3revcomp	[C/T]CTG
dnaPolPauseFrameshift1	GAG
dnaPolPauseFrameshift1comp	CTC
dnaPolPauseFrameshift2	ACG
dnaPolPauseFrameshift2rev	GCA
dnaPolPauseFrameshift2comp	TGC
dnaPolPauseFrameshift2revcomp	CGT
dnaPolPauseFrameshift3	GC[G/C]
dnaPolPauseFrameshift3rev	[G/C]CG
dnaPolPauseFrameshift3comp	CG[G/C]
dnaPolPauseFrameshift3revcomp	[G/C]GC
dnaPolPauseFrameshift4	[A/T]GGAG
dnaPolPauseFrameshift4rev	GAGG[A/T]
dnaPolPauseFrameshift4comp	[A/T]CCTC
dnaPolPauseFrameshift4revcomp	CTCC[A/T]
dnaPolPauseFrameshift5	TCCCCC
dnaPolPauseFrameshift5rev	CCCCCT
dnaPolPauseFrameshift5comp	AGGGGG
dnaPolPauseFrameshift5revcomp	GGGGGA
dnaPolPauseFrameshift6	CTGGCG
dnaPolPauseFrameshift6rev	GCGGTC
dnaPolPauseFrameshift6comp	GACCGC
dnaPolPauseFrameshift6revcomp	CGCCAG
dnaPolPauseFrameshift7	ACCC[A/T][A/G]
dnaPolPauseFrameshift7rev	[A/G][A/T]CCCA
dnaPolPauseFrameshift7comp	TGGG[A/T][T/C]
dnaPolPauseFrameshift7revcomp	[T/C][A/T]GGGT
dnaPolPauseFrameshift8	TTTT
dnaPolPauseFrameshift8comp	AAAA
dnaPolPauseFrameshift9	TGG[A/C/G/T]GT
dnaPolPauseFrameshift9rev	TG[A/C/G/T]GGT
dnaPolPauseFrameshift9comp	ACC[A/C/G/T]CA
dnaPolPauseFrameshift9revcomp	AC[A/C/G/T]CCA
dnaPolPauseFrameshift10	ACCCCA
dnaPolPauseFrameshift10comp	TGGGGT
indelHotspot1	GTAAGT
indelHotspot1rev	TGAATG
indelHotspot1comp	CATTCA
indelHotspot1revcomp	ACTTAC
insertionHotspot1	AT[A/C][A/C]GCC
insertionHotspot1rev	CCG[A/C][A/C]TA
insertionHotspot1comp	TA[T/G][T/G]CGG
insertionHotspot1revcomp	GGC[T/G][T/G]AT
insertionHotspot2	TACC[A/G]C
insertionHotspot2rev	C[A/G]CCAT
insertionHotspot2comp	ATGG[T/C]G
insertionHotspot2revcomp	G[T/C]GGTA
topoisomeraseCleavageSite1	CAT
topoisomeraseCleavageSite1rev	TAC
topoisomeraseCleavageSite1comp	GTA
topoisomeraseCleavageSite1revcomp	ATG
topoisomeraseCleavageSite2	CT[T/C]
topoisomeraseCleavageSite2rev	[T/C]TC
topoisomeraseCleavageSite2comp	GA[A/G]
topoisomeraseCleavageSite2revcomp	[A/G]AG
topoisomeraseCleavageSite3	GT[T/C]
topoisomeraseCleavageSite3rev	[T/C]TG
topoisomeraseCleavageSite3comp	CA[A/G]
topoisomeraseCleavageSite3revcomp	[A/G]AC
topoisomeraseCleavageSite4	[A/G]A[T/G]
topoisomeraseCleavageSite4rev	[T/G]A[A/G]
topoisomeraseCleavageSite4comp	[T/C]T[A/C]
topoisomeraseCleavageSite4revcomp	[A/C]T[T/C]
topoisomeraseCleavageSite5	[T/C]CCTT
topoisomeraseCleavageSite5rev	TTCC[T/C]
topoisomeraseCleavageSite5comp	[A/G]GGAA
topoisomeraseCleavageSite5revcomp	AAGG[A/G]
topoisomeraseCleavageSite6	[T/C]TA
topoisomeraseCleavageSite6rev	AT[T/C]
topoisomeraseCleavageSite6comp	[A/G]AT
topoisomeraseCleavageSite6revcomp	TA[A/G]
translinTarget1	ATGCAG
translinTarget1rev	GACGTA
translinTarget1comp	TACGTC
translinTarget1revcomp	CTGCAT
translinTarget2	GCCC[A/T][G/C][G/C][A/T]
translinTarget2rev	[A/T][G/C][G/C][A/T]CCCG
translinTarget2comp	CGGG[A/T][G/C][G/C][A/T]
translinTarget2revcomp	[A/T][G/C][G/C][A/T]GGGC
vDjRecombinationSignal1	CACAGTG
vDjRecombinationSignal1rev	GTGACAC
vDjRecombinationSignal1comp	GTGTCAC
vDjRecombinationSignal1revcomp	CACTGTG
vDjRecombinationSignal2	ACAAAAACC
vDjRecombinationSignal2rev	CCAAAAACA
vDjRecombinationSignal2comp	TGTTTTTGG
vDjRecombinationSignal2revcomp	GGTTTTTGT
x-likeSite1	CCG
x-likeSite1rev	GCC
x-likeSite1comp	GGC
x-likeSite1revcomp	CGG
x-likeSite2	GCTGGTGG
x-likeSite2rev	GGTGGTCG
x-likeSite2comp	CGACCACC
x-likeSite2revcomp	CCACCAGC
x-likeSite3	GGGCAGGA[A/C/G/T]G
x-likeSite3rev	G[A/C/G/T]AGGACGGG
x-likeSite3comp	CCCGTCCT[A/C/G/T]C
x-likeSite3revcomp	C[A/C/G/T]TCCTGCCC
x-likeSite4	GC[A/T]GG[A/T]GG
x-likeSite4rev	GG[A/T]GG[A/T]CG
x-likeSite4comp	CG[A/T]CC[A/T]CC
x-likeSite4revcomp	CC[A/T]CC[A/T]GC
x-likeSite5	GGAGGTGGGCAGGA[A/G]G
x-likeSite5rev	G[A/G]AGGACGGGTGGAGG
x-likeSite5comp	CCTCCACCCGTCCT[T/C]C
x-likeSite5revcomp	C[T/C]TCCTGCCCACCTCC
x-likeSite6	AGAGGTGGGCAGGTGG
x-likeSite6rev	GGTGGACGGGTGGAGA
x-likeSite6comp	TCTCCACCCGTCCACC
x-likeSite6revcomp	CCACCTGCCCACCTCT
author	devteam
date	Tue, 13 Oct 2015 12:15:07 -0400
parents	55069ba5af85
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