Mercurial > repos > devteam > clustalw
changeset 1:ce785326df6e draft
planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
| author | devteam |
|---|---|
| date | Tue, 13 Oct 2015 12:14:40 -0400 |
| parents | de3662385a52 |
| children | bed27b5c0f63 |
| files | repository_dependencies.xml rgClustalw.xml tool_dependencies.xml |
| diffstat | 3 files changed, 12 insertions(+), 6 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/repository_dependencies.xml Tue Oct 13 12:14:40 2015 -0400 @@ -0,0 +1,4 @@ +<?xml version="1.0"?> +<repositories> + <repository changeset_revision="9f36ad2af086" name="emboss_datatypes" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" /> +</repositories>
--- a/rgClustalw.xml Thu Jan 23 12:32:07 2014 -0500 +++ b/rgClustalw.xml Tue Oct 13 12:14:40 2015 -0400 @@ -24,7 +24,7 @@ <inputs> <page> <param format="fasta" name="input" type="data" label="Fasta File" /> - <param name="outname" label="Name for output files to make it easy to remember what you did" type="text" size="50" value="Clustal_run" /> + <param name="outname" label="Name for output files to make it easy to remember what you did" type="text" value="Clustal_run" /> <param name="dnarna" type="select" label="Data Type"> <option value="DNA" selected="True">DNA nucleotide sequences</option> <option value="PROTEIN">Protein sequences</option> @@ -57,9 +57,9 @@ <when value="complete"> </when> <when value="part"> - <param name="seq_range_start" size="5" type="integer" value="1" label="start point" help="sequence range to write"> + <param name="seq_range_start" type="integer" value="1" label="start point" help="sequence range to write"> </param> - <param name="seq_range_end" size="5" type="integer" value="99999" label="end point" > + <param name="seq_range_end" type="integer" value="99999" label="end point" > </param> </when> </conditional> @@ -125,7 +125,9 @@ .. _LGPL: http://www.gnu.org/copyleft/lesser.html - </help> - + </help> + <citations> + <citation type="doi">10.1093/bioinformatics/btm404</citation> + </citations> </tool>
--- a/tool_dependencies.xml Thu Jan 23 12:32:07 2014 -0500 +++ b/tool_dependencies.xml Tue Oct 13 12:14:40 2015 -0400 @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool_dependency> <package name="clustalw2" version="2.1"> - <repository changeset_revision="2f10e85b56ab" name="package_clustalw_2_1" owner="devteam" prior_installation_required="False" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="2f10e85b56ab" name="package_clustalw_2_1" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> </tool_dependency>