# HG changeset patch
# User devteam
# Date 1444752880 14400
# Node ID ce785326df6ef4ccec3145e62cf0ed65e84cd3cb
# Parent  de3662385a52fde189b4d389826eb3517edadf17
planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734

diff -r de3662385a52 -r ce785326df6e repository_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/repository_dependencies.xml	Tue Oct 13 12:14:40 2015 -0400
@@ -0,0 +1,4 @@
+<?xml version="1.0"?>
+<repositories>
+    <repository changeset_revision="9f36ad2af086" name="emboss_datatypes" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+</repositories>
diff -r de3662385a52 -r ce785326df6e rgClustalw.xml
--- a/rgClustalw.xml	Thu Jan 23 12:32:07 2014 -0500
+++ b/rgClustalw.xml	Tue Oct 13 12:14:40 2015 -0400
@@ -24,7 +24,7 @@
   <inputs>
    <page>
     <param format="fasta" name="input" type="data" label="Fasta File" />
-    <param name="outname" label="Name for output files to make it easy to remember what you did" type="text" size="50" value="Clustal_run" />
+    <param name="outname" label="Name for output files to make it easy to remember what you did" type="text" value="Clustal_run" />
     <param name="dnarna" type="select" label="Data Type">
       <option value="DNA" selected="True">DNA nucleotide sequences</option>
       <option value="PROTEIN">Protein sequences</option>
@@ -57,9 +57,9 @@
         <when value="complete">
         </when>
         <when value="part">    
-           <param name="seq_range_start" size="5" type="integer" value="1" label="start point" help="sequence range to write">
+           <param name="seq_range_start" type="integer" value="1" label="start point" help="sequence range to write">
            </param>
-           <param name="seq_range_end" size="5" type="integer" value="99999" label="end point" >
+           <param name="seq_range_end" type="integer" value="99999" label="end point" >
            </param> 
         </when>
     </conditional>
@@ -125,7 +125,9 @@
 
 .. _LGPL: http://www.gnu.org/copyleft/lesser.html
 
-  </help>
-
+    </help>
+    <citations>
+        <citation type="doi">10.1093/bioinformatics/btm404</citation>
+    </citations>
 </tool>
 
diff -r de3662385a52 -r ce785326df6e tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Jan 23 12:32:07 2014 -0500
+++ b/tool_dependencies.xml	Tue Oct 13 12:14:40 2015 -0400
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
   <package name="clustalw2" version="2.1">
-      <repository changeset_revision="2f10e85b56ab" name="package_clustalw_2_1" owner="devteam" prior_installation_required="False" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+      <repository changeset_revision="2f10e85b56ab" name="package_clustalw_2_1" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>