Mercurial > repos > devteam > clustalw

annotate rgClustalw.xml @ 2:bed27b5c0f63 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
author devteam
date Mon, 22 May 2017 21:02:31 -0400
parents ce785326df6e
children fac9d3c091cb
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
2
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
1 <tool id="clustalw" name="ClustalW" version="2.1">
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
2 <description>multiple sequence alignment program for DNA or proteins</description>
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
3 <requirements>
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
4 <requirement type="package" version="2.1">clustalw</requirement>
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
5 </requirements>
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
6 <command detect_errors="exit_code"><![CDATA[
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
7 ln -s '$input' input.fasta &&
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
8 clustalw2 -INFILE=input.fasta -OUTFILE='$output' -OUTORDER=$out_order -TYPE=$dnarna
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
9 #if $outcontrol.outform == "clustal"
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
10 -OUTPUT=CLUSTAL
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
11 #if $outcontrol.out_seqnos == "ON"
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
12 -SEQNOS=ON
0
de3662385a52 Imported from capsule None
devteam
parents:
diff changeset
13 #end if
2
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
14 #end if
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
15 #if $outcontrol.outform == "phylip"
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
16 -OUTPUT=PHYLIP
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
17 #end if
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
18 #if $outcontrol.outform == "fasta"
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
19 -OUTPUT=FASTA
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
20 #end if
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
21 #if $range.mode == "part"
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
22 -RANGE=${range.seq_range_start},${range.seq_range_end}
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
23 #end if
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
24 ]]></command>
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
25 <inputs>
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
26 <param name="input" type="data" format="fasta" label="FASTA file" />
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
27 <param name="dnarna" type="select" label="Data type">
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
28 <option value="DNA" selected="True">DNA nucleotide sequences</option>
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
29 <option value="PROTEIN">Protein sequences</option>
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
30 </param>
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
31 <conditional name="outcontrol">
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
32 <param name="outform" type="select" label="Output alignment format">
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
33 <option value="clustal" selected="True">Native Clustal output format</option>
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
34 <option value="phylip">PHYLIP format</option>
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
35 <option value="fasta">FASTA format</option>
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
36 </param>
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
37 <when value="fasta" />
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
38 <when value="phylip" />
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
39 <when value="clustal">
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
40 <param name="out_seqnos" type="boolean" truevalue="ON" falsevalue="OFF" label="Show residue numbers in clustal format output" />
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
41 </when>
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
42 </conditional>
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
43 <param name="out_order" type="select" label="Output order">
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
44 <option value="ALIGNED">Aligned</option>
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
45 <option value="INPUT">Same order as input file</option>
0
de3662385a52 Imported from capsule None
devteam
parents:
diff changeset
46 </param>
2
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
47 <conditional name="range">
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
48 <param name="mode" type="select" label="Output complete alignment (or specify part to output)">
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
49 <option value="complete">Complete alignment</option>
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
50 <option value="part">Only part of the alignment</option>
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
51 </param>
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
52 <when value="complete" />
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
53 <when value="part">
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
54 <param name="seq_range_start" type="integer" value="1" label="Start point" help="Sequence range to write" />
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
55 <param name="seq_range_end" type="integer" value="99999" label="End point" />
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
56 </when>
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
57 </conditional>
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
58 </inputs>
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
59 <outputs>
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
60 <data name="output" format="clustal" label="${tool.name} on ${on_string}: ${outcontrol.outform}">
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
61 <change_format>
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
62 <when input="outcontrol.outform" value="phylip" format="phylip" />
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
63 <when input="outcontrol.outform" value="fasta" format="fasta" />
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
64 </change_format>
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
65 </data>
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
66 <data name="dnd" format="nhx" label="${tool.name} on ${on_string}: dnd" from_work_dir="input.dnd" />
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
67 </outputs>
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
68 <tests>
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
69 <test>
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
70 <param name="input" value="rgClustal_testin.fasta" />
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
71 <param name="outform" value="fasta" />
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
72 <param name="dnarna" value="DNA" />
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
73 <param name="mode" value="complete" />
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
74 <param name="out_order" value="ALIGNED" />
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
75 <output name="output" file="rgClustal_testout.fasta" ftype="fasta" />
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
76 <output name="dnd" file="rgClustal_testin.dnd" ftype="nhx" />
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
77 </test>
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
78 </tests>
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
79 <help><![CDATA[
0
de3662385a52 Imported from capsule None
devteam
parents:
diff changeset
80 **Note**
de3662385a52 Imported from capsule None
devteam
parents:
diff changeset
81
2
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
82 This tool allows you to run a multiple sequence alignment with ClustalW_ using the default options.
0
de3662385a52 Imported from capsule None
devteam
parents:
diff changeset
83
2
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
84 You can align DNA or protein sequences in the input file which should be multiple sequences to be aligned in a FASTA file.
0
de3662385a52 Imported from capsule None
devteam
parents:
diff changeset
85
2
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
86 The alignments will appear as a clustal format file or optionally, as PHYLIP or FASTA format files in your history. If you choose FASTA as
0
de3662385a52 Imported from capsule None
devteam
parents:
diff changeset
87 the output format, you can create a 'Logo' image using the Sequence Logo tool.
de3662385a52 Imported from capsule None
devteam
parents:
diff changeset
88
2
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
89 If Clustal format is chosen, you have the option of adding basepair counts to the output.
0
de3662385a52 Imported from capsule None
devteam
parents:
diff changeset
90
2
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
91 A subsequence of the alignment can be output by setting the Output complete parameter to "Partial" and defining the offset and end of the subsequence to be output.
0
de3662385a52 Imported from capsule None
devteam
parents:
diff changeset
92
de3662385a52 Imported from capsule None
devteam
parents:
diff changeset
93 ----
de3662385a52 Imported from capsule None
devteam
parents:
diff changeset
94
de3662385a52 Imported from capsule None
devteam
parents:
diff changeset
95 **Attribution**
de3662385a52 Imported from capsule None
devteam
parents:
diff changeset
96
2
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
97 The first iteration of this Galaxy wrapper was written by Hans-Rudolf Hotz.
0
de3662385a52 Imported from capsule None
devteam
parents:
diff changeset
98
2
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
99 It was modified by Ross Lazarus for the rgenetics project - tests and some additional parameters were added.
0
de3662385a52 Imported from capsule None
devteam
parents:
diff changeset
100
2
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
101 This wrapper is released licensed under the LGPL_.
0
de3662385a52 Imported from capsule None
devteam
parents:
diff changeset
102
2
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
103 .. _ClustalW: http://www.clustal.org/clustal2/
0
de3662385a52 Imported from capsule None
devteam
parents:
diff changeset
104
2
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
105 .. _LGPL: https://www.gnu.org/copyleft/lesser.html
bed27b5c0f63 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/clustalw commit 31dd2ec1d105282421df5d6801c65cdcfd589f59
devteam
parents: 1
diff changeset
106 ]]></help>
1
ce785326df6e planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
devteam
parents: 0
diff changeset
107 <citations>
ce785326df6e planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
devteam
parents: 0
diff changeset
108 <citation type="doi">10.1093/bioinformatics/btm404</citation>
ce785326df6e planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
devteam
parents: 0
diff changeset
109 </citations>
0
de3662385a52 Imported from capsule None
devteam
parents:
diff changeset
110 </tool>