Mercurial > repos > deepakjadmin > rcpp_edger_limma_test3

changeset 2:277c17414f17 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author deepakjadmin
date Thu, 24 Sep 2015 03:29:13 -0400
parents 3e852cd7f528
children b732f4c07557
files rtest.xml
diffstat 1 files changed, 23 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/rtest.xml	Thu Sep 24 03:29:13 2015 -0400
@@ -0,0 +1,23 @@
+<tool id="djvytfdgkdls" name="R 3.2.0 test" version="1.0.0">
+  <description>R version and installation test</description>
+<requirements>
+     <requirement type="set_environment">R_ROOT_DIR</requirement>
+    <requirement type="package" version="3.2.0">R</requirement>
+    <requirement type="package" version="3.24.12">limma</requirement>
+</requirements>
+  <command>   	 GALAXY_ROOT_DIR=`pwd`; 
+  		 echo \$GALAXY_ROOT_DIR &gt; $log 2&gt;&amp;1;
+                 cd ../../../../;
+                 GALAXY_ROOT_DIR=`pwd`;
+                 echo \$GALAXY_ROOT_DIR &gt; $log 2&gt;&amp;1;
+                 \$R_ROOT_DIR/bin/Rscript \${GALAXY_ROOT_DIR}/tools/toop2/test.R $output  &gt; $log 2&gt;&amp;1
+   </command>
+  <outputs>
+    <data type="data" name="output" label ="outputfile" />
+    <data type="text" name="log" label ="packages loaded" />
+  </outputs>
+  <help>
+ 
+  </help>
+</tool>
+