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2
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1 <tool id="djvytfdgkdls" name="R 3.2.0 test" version="1.0.0">
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2 <description>R version and installation test</description>
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3 <requirements>
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4 <requirement type="set_environment">R_ROOT_DIR</requirement>
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5 <requirement type="package" version="3.2.0">R</requirement>
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6 <requirement type="package" version="3.24.12">limma</requirement>
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7 </requirements>
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8 <command> GALAXY_ROOT_DIR=`pwd`;
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9 echo \$GALAXY_ROOT_DIR > $log 2>&1;
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10 cd ../../../../;
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11 GALAXY_ROOT_DIR=`pwd`;
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12 echo \$GALAXY_ROOT_DIR > $log 2>&1;
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13 \$R_ROOT_DIR/bin/Rscript \${GALAXY_ROOT_DIR}/tools/toop2/test.R $output > $log 2>&1
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14 </command>
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15 <outputs>
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3
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16 <data type="data" format="RData" name="output" label ="outputfile" />
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17 <data format="txt" name="log" label ="packages loaded" />
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2
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18 </outputs>
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19 <help>
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20
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21 </help>
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22 </tool>
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23
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