Mercurial > repos > deepakjadmin > rcpp_edger_limma_test2

changeset 1:5e3fd49af978 draft default tip

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Uploaded
author deepakjadmin
date Wed, 23 Sep 2015 14:58:44 -0400
parents 7171114c3734
children
files rtest.xml test.R
diffstat 2 files changed, 1 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/rtest.xml	Wed Sep 23 14:24:35 2015 -0400
+++ b/rtest.xml	Wed Sep 23 14:58:44 2015 -0400
@@ -8,7 +8,7 @@
   <command>   	 GALAXY_ROOT_DIR=`pwd`; 
                  cd ../../../../;
                  GALAXY_ROOT_DIR=`pwd`;
-                 \$R_ROOT_DIR/bin/Rscript \${GALAXY_ROOT_DIR}/tools/toop2/test.R $output;
+                 \$R_ROOT_DIR/bin/Rscript \${GALAXY_ROOT_DIR}/tools/toop2/test.R $output &amp;&gt;1 ;
    </command>
   <outputs>
     <data type="data" name="output" label ="outputfile" />
--- a/test.R	Wed Sep 23 14:24:35 2015 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,6 +0,0 @@
-args <- commandArgs(T)
-arg1 <- args[1] ## Reae Input prediction file
-library("Rcpp")
-library("edgeR")
-asd <- sessionInfo()
-save(asd,file=arg1)