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1 args <- commandArgs(TRUE)
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2 ####source("/home/galaxy/galaxy-dist/tools/mpdstools/tool1/csv2rdatatrain2.R")
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3
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4 csv2rdatatrain <- function(arg1,arg2){ file <- read.csv(arg1,row.names =1, header=T)
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5 col <- ncol(file)
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6 stopifnot(is.null(file) | col > 2 )
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7
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8 #cat("the Outcome column is not a factor vector.\n",file=stderr())
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9 stopifnot(is.numeric(file[,col]))
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10
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11 # if(is.numeric(file[,col]) {
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12 dataX <- file[,1:(col-1)]
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13 dataY <- file[,col]
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14 stopifnot(nrow(dataX) == length(dataY))
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15 save(dataX,dataY,file=arg2)
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16 # }else { cat("the Outcome column has less number of entry than number of compounds.please check input file.\n",file=stderr())
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17 # }
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18 }
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19
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20 csv2rdatatrain(args[1],args[2])
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21
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