Mercurial > repos > deepakjadmin > mayatool3_test3
diff mayachemtools/docs/modules/html/PeriodicTable.html @ 0:73ae111cf86f draft
Uploaded
| author | deepakjadmin |
|---|---|
| date | Wed, 20 Jan 2016 11:55:01 -0500 |
| parents | |
| children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/mayachemtools/docs/modules/html/PeriodicTable.html Wed Jan 20 11:55:01 2016 -0500 @@ -0,0 +1,267 @@ +<html> +<head> +<title>MayaChemTools:Documentation:PeriodicTable.pm</title> +<meta http-equiv="content-type" content="text/html;charset=utf-8"> +<link rel="stylesheet" type="text/css" href="../../css/MayaChemTools.css"> +</head> +<body leftmargin="20" rightmargin="20" topmargin="10" bottommargin="10"> +<br/> +<center> +<a href="http://www.mayachemtools.org" title="MayaChemTools Home"><img src="../../images/MayaChemToolsLogo.gif" border="0" alt="MayaChemTools"></a> +</center> +<br/> +<div class="DocNav"> +<table width="100%" border=0 cellpadding=0 cellspacing=2> +<tr align="left" valign="top"><td width="33%" align="left"><a href="./PDBFileUtil.html" title="PDBFileUtil.html">Previous</a> <a href="./index.html" title="Table of Contents">TOC</a> <a href="./PseudoHeap.html" title="PseudoHeap.html">Next</a></td><td width="34%" align="middle"><strong>PeriodicTable.pm</strong></td><td width="33%" align="right"><a href="././code/PeriodicTable.html" title="View source code">Code</a> | <a href="./../pdf/PeriodicTable.pdf" title="PDF US Letter Size">PDF</a> | <a href="./../pdfgreen/PeriodicTable.pdf" title="PDF US Letter Size with narrow margins: www.changethemargins.com">PDFGreen</a> | <a href="./../pdfa4/PeriodicTable.pdf" title="PDF A4 Size">PDFA4</a> | <a href="./../pdfa4green/PeriodicTable.pdf" title="PDF A4 Size with narrow margins: www.changethemargins.com">PDFA4Green</a></td></tr> +</table> +</div> +<p> +</p> +<h2>NAME</h2> +<p>PeriodicTable</p> +<p> +</p> +<h2>SYNOPSIS</h2> +<p>use PeriodicTable;</p> +<p>use PeriodicTable qw(:all);</p> +<p> +</p> +<h2>DESCRIPTION</h2> +<p><strong>PeriodicTable</strong> module provides the following functions:</p> +<p> <a href="#getelementmostabundantnaturalisotopedata">GetElementMostAbundantNaturalIsotopeData</a> +, <a href="#getelementmostabundantnaturalisotopemass">GetElementMostAbundantNaturalIsotopeMass</a> +, <a href="#getelementmostabundantnaturalisotopemassnumber">GetElementMostAbundantNaturalIsotopeMassNumber</a>, <a href="#getelementnaturalisotopeabundance">GetElementNaturalIsotopeAbundance</a> +, <a href="#getelementnaturalisotopecount">GetElementNaturalIsotopeCount</a>, <a href="#getelementnaturalisotopemass">GetElementNaturalIsotopeMass</a> +, <a href="#getelementnaturalisotopesdata">GetElementNaturalIsotopesData</a>, <a href="#getelementpropertiesdata">GetElementPropertiesData</a> +, <a href="#getelementpropertiesnames">GetElementPropertiesNames</a>, <a href="#getelementpropertiesnamesandunits">GetElementPropertiesNamesAndUnits</a> +, <a href="#getelementpropertyunits">GetElementPropertyUnits</a>, <a href="#getelements">GetElements</a>, <a href="#getelementsbyamericanstylegrouplabel">GetElementsByAmericanStyleGroupLabel</a> +, <a href="#getelementsbyeuropeanstylegrouplabel">GetElementsByEuropeanStyleGroupLabel</a>, <a href="#getelementsbygroupname">GetElementsByGroupName</a> +, <a href="#getelementsbygroupnumber">GetElementsByGroupNumber</a>, <a href="#getelementsbyperiodnumber">GetElementsByPeriodNumber</a> +, <a href="#getiupacgroupnumberfromamericanstylegrouplabel">GetIUPACGroupNumberFromAmericanStyleGroupLabel</a> +, <a href="#getiupacgroupnumberfromeuropeanstylegrouplabel">GetIUPACGroupNumberFromEuropeanStyleGroupLabel</a>, <a href="#iselement">IsElement</a> +, <a href="#iselementnaturalisotopemassnumber">IsElementNaturalIsotopeMassNumber</a>, <a href="#iselementproperty">IsElementProperty</a> +</p><p> +</p> +<h2>METHODS</h2> +<dl> +<dt><strong><a name="getelements" class="item"><strong>GetElements</strong></a></strong></dt> +<dd> +<div class="OptionsBox"> + @ElementSymbols = GetElements(); +<br/> $ElementSymbolsRef = GetElements();</div> +<p>Returns an array or a reference to an array of known element symbols</p> +</dd> +<dt><strong><a name="getelementsbygroupname" class="item"><strong>GetElementsByGroupName</strong></a></strong></dt> +<dd> +<div class="OptionsBox"> + @ElementSymbols = GetElementsByGroupName($GroupName); +<br/> $ElementSymbolsRef = GetElementsByGroupName($GroupName);</div> +<p>Returns an array or a reference to an array of element symbols for a specified <em>GroupName</em>. +Supported <em>GroupName</em> values are: <em>Alkali metals, Alkaline earth metals, Coinage metals, Pnictogens, +Chalcogens, Halogens, Noble gases</em>; Additionally, usage of <em>Lanthanides</em> (Lanthanoids) +and <em>Actinides</em> (Actinoids) is also supported.</p> +</dd> +<dt><strong><a name="getelementsbygroupnumber" class="item"><strong>GetElementsByGroupNumber</strong></a></strong></dt> +<dd> +<div class="OptionsBox"> + @ElementSymbols = GetElementsByGroupNumber($GroupNumber); +<br/> $ElementSymbolsRef = GetElementsByGroupNumber($GroupNumber);</div> +<p>Returns an array or a reference to an array of element symbols for a specified <em>GroupNumber</em></p> +</dd> +<dt><strong><a name="getelementsbyamericanstylegrouplabel" class="item"><strong>GetElementsByAmericanStyleGroupLabel</strong></a></strong></dt> +<dd> +<div class="OptionsBox"> + @ElementSymbols = GetElementsByAmericanStyleGroupLabel($GroupLabel); +<br/> $ElementSymbolsRef = GetElementsByAmericanStyleGroupLabel($GroupLabel);</div> +<p>Returns an array or a reference to an array of element symbols for a specified American +style <em>GroupLabel</em>. Valid values for Amercian style group labels: <em>IA to VIIIA, IB to VIIIB, VIII</em>.</p> +</dd> +<dt><strong><a name="getelementsbyeuropeanstylegrouplabel" class="item"><strong>GetElementsByEuropeanStyleGroupLabel</strong></a></strong></dt> +<dd> +<div class="OptionsBox"> + @ElementSymbols = GetElementsByEuropeanStyleGroupLabel($GroupLabel); +<br/> $ElementSymbolsRef = GetElementsByEuropeanStyleGroupLabel($GroupLabel);</div> +<p>Returns an array or a reference to an array of element symbols for a specified European +style <em>GroupLabel</em>. Valid values for European style group labels: <em>IA to VIIIA, IB to VIIIB, VIII</em>.</p> +</dd> +<dt><strong><a name="getelementsbyperiodnumber" class="item"><strong>GetElementsByPeriodNumber</strong></a></strong></dt> +<dd> +<div class="OptionsBox"> + @ElementSymbols = GetElementsByPeriodNumber($PeriodNumber); +<br/> $ElementSymbolsRef = GetElementsByPeriodNumber($PeriodNumber);</div> +<p>Returns an array or a reference to an array of element symbols for a specified <em>PeriodNumber</em>.</p> +</dd> +<dt><strong><a name="getelementmostabundantnaturalisotopedata" class="item"><strong>GetElementMostAbundantNaturalIsotopeData</strong></a></strong></dt> +<dd> +<div class="OptionsBox"> + @IsotopeData = GetElementMostAbundantNaturalIsotopeData( + $ElementID); +<br/> $IsotopeDataRef = GetElementMostAbundantNaturalIsotopeData( + $ElementID);</div> +<p>Returns an array or reference to an array containing data for most abundant isotope of +an element specfied by element symbol or atomic number. Isotope data arrays contain these +values: <em>AtomicNumber, IsotopeSymbol, MassNumber, RelativeAtomicMass, and NaturalAbundance</em>.</p> +</dd> +<dt><strong><a name="getelementmostabundantnaturalisotopemassnumber" class="item"><strong>GetElementMostAbundantNaturalIsotopeMassNumber</strong></a></strong></dt> +<dd> +<div class="OptionsBox"> + $MassNumber = GetElementMostAbundantNaturalIsotopeMassNumber($ElementID);</div> +<p>Returns mass number of most abundant natural isotope of an element specfied by element +symbol or atomic number</p> +</dd> +<dt><strong><a name="getelementnaturalisotopecount" class="item"><strong>GetElementNaturalIsotopeCount</strong></a></strong></dt> +<dd> +<div class="OptionsBox"> + $IsotopeCount = GetElementNaturalIsotopeCount($ElementID);</div> +<p>Returns natural isotope count for an element specfied by element symbol or +atomic number</p> +</dd> +<dt><strong><a name="getelementnaturalisotopesdata" class="item"><strong>GetElementNaturalIsotopesData</strong></a></strong></dt> +<dd> +<div class="OptionsBox"> + $DataHashRef = GetElementNaturalIsotopesData($ElementID, + [$MassNumber]);</div> +<p>Reurns a reference to a hash containingall available isotope data for an element specified +using element symbol or aromic number; an optional mass number indicates retrieve data +for a specific isotope</p> +</dd> +<dt><strong><a name="getelementnaturalisotopeabundance" class="item"><strong>GetElementNaturalIsotopeAbundance</strong></a></strong></dt> +<dd> +<div class="OptionsBox"> + $Abundance = GetElementNaturalIsotopeAbundance($ElementID, + $MassNumber);</div> +<p>Returns percent abundance of natural isotope for an element with specfic mass +number.</p> +</dd> +<dt><strong><a name="getelementmostabundantnaturalisotopemass" class="item"><strong>GetElementMostAbundantNaturalIsotopeMass</strong></a></strong></dt> +<dd> +<div class="OptionsBox"> + $RelativeAtomicMass = GetElementMostAbundantNaturalIsotopeMass( + $ElementID);</div> +<p>Returns relative atomic mass of most abundant isotope for an element specified using +element symbol or aromic number.</p> +</dd> +<dt><strong><a name="getelementnaturalisotopemass" class="item"><strong>GetElementNaturalIsotopeMass</strong></a></strong></dt> +<dd> +<div class="OptionsBox"> + $RelativeAtomicMass = GetElementNaturalIsotopeMass($ElementID, + $MassNumber);</div> +<p>Returns relative atomic mass of an element with specfic mass number.</p> +</dd> +<dt><strong><a name="getelementpropertiesdata" class="item"><strong>GetElementPropertiesData</strong></a></strong></dt> +<dd> +<div class="OptionsBox"> + $PropertyDataHashRef = GetElementPropertiesData($ElementID);</div> +<p>Returns a reference to a hash containing all available properties data for an element +specified using element symbol or atomic number.</p> +</dd> +<dt><strong><a name="getelementpropertyname" class="item"><strong>GetElementPropertyName</strong></a></strong></dt> +<dd> +<div class="OptionsBox"> + $PropertyValue = GetElement<PropertyName>($ElementID);</div> +<p>Returns value of an element for a element specified using element symbol or atomic number.</p> +<p>These functions are not defined in this modules; these are implemented on-the-fly using +Perl's AUTOLOAD funcionality.</p> +<p>Here is the list of known element <em>property names</em>: AllenElectronegativity, +AllredRochowElectronegativity, AtomicNumber, AtomicRadiusCalculated, +AtomicRadiusEmpirical, AtomicWeight, Block, BoilingPoint, BondLength, +BrinellHardness, BulkModulus, Classification, CoefficientOfLinearExpansion, Color, +CommonValences, LowestCommonValence, HighestCommonValence, +CommonOxidationNumbers, LowestCommonOxidationNumber, HighestCommonOxidationNumber, +CovalentRadiusEmpirical, CriticalTemperature, DensityOfSolid, DiscoveredAt, DiscoveredBy, +DiscoveredWhen, ElectricalResistivity, ElectronAffinity, ElementName, ElementSymbol, EnthalpyOfAtmization, +EnthalpyOfFusion, EnthalpyOfVaporization, FirstIonizationEnergy, GroundStateConfiguration, GroundStateLevel, +GroupName, GroupNumber, NaturalIsotopeData, MeltingPoint, MineralHardness, MolarVolume, +MullikenJaffeElectronegativity, OriginOfName, PaulingElectronegativity, PeriodNumber, PoissonsRatio, +Reflectivity, RefractiveIndex, RigidityModulus, SandersonElectronegativity, StandardState, +SuperconductionTemperature, ThermalConductivity, VanderWaalsRadius, VelocityOfSound, VickersHardness, +YoungsModulus.</p> +</dd> +<dt><strong><a name="getelementpropertiesnames" class="item"><strong>GetElementPropertiesNames</strong></a></strong></dt> +<dd> +<div class="OptionsBox"> + @PropertyNames = GetElementPropertiesNames([$Mode]); +<br/> $PropertyNamesRef = GetElementPropertiesNames([$Mode]);</div> +<p>Returns names of all available element properties. Optional mode parameter controls +grouping of property names; Possible values: <em>ByGroup or Alphabetical</em>. Default: +<em>ByGroup</em>.</p> +</dd> +<dt><strong><a name="getelementpropertiesnamesandunits" class="item"><strong>GetElementPropertiesNamesAndUnits</strong></a></strong></dt> +<dd> +<div class="OptionsBox"> + $NameUnitsHashRef = GetElementPropertiesNamesAndUnits();</div> +<p>Returns a reference to a hash of property names and units of all available element +properties. Names with no units contains empty strings.</p> +</dd> +<dt><strong><a name="getelementpropertyunits" class="item"><strong>GetElementPropertyUnits</strong></a></strong></dt> +<dd> +<div class="OptionsBox"> + $Units = GetElementPropertyUnits($PropertyName);</div> +<p>Returns units for a specific element property name. An empty string is returned for +a property with no units.</p> +</dd> +<dt><strong><a name="getiupacgroupnumberfromamericanstylegrouplabel" class="item"><strong>GetIUPACGroupNumberFromAmericanStyleGroupLabel</strong></a></strong></dt> +<dd> +<div class="OptionsBox"> + $GroupNumber = GetIUPACGroupNumberFromAmericanStyleGroupLabel( + $GroupLabel);</div> +<p>Returns IUPAC group numbers of a specific American style group label. A comma delimited +string is returned for group VIII or VIIIB.</p> +</dd> +<dt><strong><a name="getiupacgroupnumberfromeuropeanstylegrouplabel" class="item"><strong>GetIUPACGroupNumberFromEuropeanStyleGroupLabel</strong></a></strong></dt> +<dd> +<div class="OptionsBox"> + $GroupNumber = GetIUPACGroupNumberFromEuropeanStyleGroupLabel( + $GroupLabel);</div> +<p>Returns IUPAC group numbers of a specific European style group label. A comma delimited +string is returned for group VIII or VIIIA.</p> +</dd> +<dt><strong><a name="iselement" class="item"><strong>IsElement</strong></a></strong></dt> +<dd> +<div class="OptionsBox"> + $Status = IsElement($ElementID);</div> +<p>Returns 1 or 0 based on whether it's a known element symbol or atomic number.</p> +</dd> +<dt><strong><a name="iselementnaturalisotopemassnumber" class="item"><strong>IsElementNaturalIsotopeMassNumber</strong></a></strong></dt> +<dd> +<div class="OptionsBox"> + $Status = IsElementNaturalIsotopeMassNumber($ElementID, $MassNumber);</div> +<p>Returns 1 or 0 based on whether it's a valid mass number for an element symbol +or atomic number.</p> +</dd> +<dt><strong><a name="iselementproperty" class="item"><strong>IsElementProperty</strong></a></strong></dt> +<dd> +<div class="OptionsBox"> + $Status = IsElementProperty($PropertyName);</div> +<p>Returns 1 or 0 based on whether it's a valid property name.</p> +</dd> +</dl> +<p> +</p> +<h2>AUTHOR</h2> +<p><a href="mailto:msud@san.rr.com">Manish Sud</a></p> +<p> +</p> +<h2>SEE ALSO</h2> +<p><a href="./AminoAcids.html">AminoAcids.pm</a>, <a href="./NucleicAcids.html">NucleicAcids.pm</a> +</p> +<p> +</p> +<h2>COPYRIGHT</h2> +<p>Copyright (C) 2015 Manish Sud. All rights reserved.</p> +<p>This file is part of MayaChemTools.</p> +<p>MayaChemTools is free software; you can redistribute it and/or modify it under +the terms of the GNU Lesser General Public License as published by the Free +Software Foundation; either version 3 of the License, or (at your option) +any later version.</p> +<p> </p><p> </p><div class="DocNav"> +<table width="100%" border=0 cellpadding=0 cellspacing=2> +<tr align="left" valign="top"><td width="33%" align="left"><a href="./PDBFileUtil.html" title="PDBFileUtil.html">Previous</a> <a href="./index.html" title="Table of Contents">TOC</a> <a href="./PseudoHeap.html" title="PseudoHeap.html">Next</a></td><td width="34%" align="middle"><strong>March 29, 2015</strong></td><td width="33%" align="right"><strong>PeriodicTable.pm</strong></td></tr> +</table> +</div> +<br /> +<center> +<img src="../../images/h2o2.png"> +</center> +</body> +</html>