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15 <tr align="left" valign="top"><td width="33%" align="left"><a href="./MoleculeFileIO.html" title="MoleculeFileIO.html">Previous</a> <a href="./index.html" title="Table of Contents">TOC</a> <a href="./ObjectProperty.html" title="ObjectProperty.html">Next</a></td><td width="34%" align="middle"><strong>NucleicAcids.pm</strong></td><td width="33%" align="right"><a href="././code/NucleicAcids.html" title="View source code">Code</a> | <a href="./../pdf/NucleicAcids.pdf" title="PDF US Letter Size">PDF</a> | <a href="./../pdfgreen/NucleicAcids.pdf" title="PDF US Letter Size with narrow margins: www.changethemargins.com">PDFGreen</a> | <a href="./../pdfa4/NucleicAcids.pdf" title="PDF A4 Size">PDFA4</a> | <a href="./../pdfa4green/NucleicAcids.pdf" title="PDF A4 Size with narrow margins: www.changethemargins.com">PDFA4Green</a></td></tr>
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16 </table>
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17 </div>
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18 <p>
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19 </p>
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20 <h2>NAME</h2>
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21 <p>NucleicAcids</p>
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22 <p>
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23 </p>
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24 <h2>SYNOPSIS</h2>
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25 <p>use NucleicAcids;</p>
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26 <p>use NucleicAcids qw(:all);</p>
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27 <p>
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28 </p>
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29 <h2>DESCRIPTION</h2>
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30 <p><strong>NucleicAcids</strong> module the provides the following functions:</p>
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31 <p>GetNucleicAcidPropertiesData, GetNucleicAcidPropertiesNames,
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32 GetNucleicAcids, GetNucleicAcidsByType, IsNucleicAcid, IsNucleicAcidProperty,
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33 IsNucleicAcidType</p>
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34 <p>
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35 </p>
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36 <h2>Functions</h2>
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37 <dl>
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38 <dt><strong><a name="getnucleicacids" class="item"><strong>GetNucleicAcids</strong></a></strong></dt>
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39 <dd>
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40 <div class="OptionsBox">
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41 (@Names) = GetNucleicAcids([$NameType]);
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42 <br/> $NamesRef = GetNucleicAcids([$NameType]);</div>
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43 <p>Returns an array or a reference to an array containing names of nucleic acids
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44 as a code or nucleic acid name controlled by optional parameter <em>NameType</em>. By
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45 default, nucleic acids names are returned as the code. Possible values for
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46 <em>NameType</em>: <em>Code or Name</em>.</p>
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47 </dd>
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48 <dt><strong><a name="getnucleicacidsbytype" class="item"><strong>GetNucleicAcidsByType</strong></a></strong></dt>
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49 <dd>
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50 <div class="OptionsBox">
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51 (@Names) = GetNucleicAcidsByType([$Type, $NameType]);
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52 <br/> $NamesRef = GetNucleicAcidsByType([$Type, $NameType]);</div>
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53 <p>Returns an array or a reference to an array containing names of nucleic acids
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54 specified by parameter <em>Type</em> as a code or name controlled by optional
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55 parameter <em>NameType</em>. Default values for <em>Type</em>: <em>Nucleoside</em>. Default value for
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56 <em>NameType</em>: <em>Code</em>. Possible values for <em>Type</em>: <em>Nucleobase, Nucleoside, Deoxynucleoside,
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57 Nucleotide, Deoxynucleotide</em>. Possible values for <em>NameType</em>: <em>Code or Name</em>.</p>
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58 </dd>
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59 <dt><strong><a name="getnucleicacidpropertiesdata" class="item"><strong>GetNucleicAcidPropertiesData</strong></a></strong></dt>
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60 <dd>
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61 <div class="OptionsBox">
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62 $DataHashRef = GetNucleicAcidPropertiesData($NucleicAcidID);</div>
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63 <p>Returns a reference to hash containing property names and values for a specified
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64 <em>NucleicAcidID</em>.</p>
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65 </dd>
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66 <dt><strong><a name="getnucleicacidpropertyname" class="item"><strong>GetNucleicAcidPropertyName</strong></a></strong></dt>
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67 <dd>
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68 <div class="OptionsBox">
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69 $Value = GetNucleicAcid<PropertyName>($NucleicAcidID);</div>
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70 <p>Returns nucleic acid property value for a specified <em>NucleicAcidID</em>. This function is
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71 implemented on-the-fly using Perl's AUTOLOAD functionality.</p>
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72 </dd>
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73 <dt><strong><a name="getnucleicacidpropertiesnames" class="item"><strong>GetNucleicAcidPropertiesNames</strong></a></strong></dt>
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74 <dd>
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75 <div class="OptionsBox">
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76 @Names = GetNucleicAcidPropertiesNames([$Mode]);
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77 <br/> $NamesRef = GetNucleicAcidPropertiesNames([$Mode]);</div>
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78 <p>Returns an array or a reference to an array containing names of properties for
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79 nucleic acids. Order of nucleic acids properties is controlled by optional parameter
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80 <em>Mode</em>. Possible values for <em>Mode</em>: <em>Alphabetical or ByGroup</em>; Default: <em>ByGroup</em>.</p>
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81 </dd>
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82 <dt><strong><a name="isnucleicacid" class="item"><strong>IsNucleicAcid</strong></a></strong></dt>
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83 <dd>
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84 <div class="OptionsBox">
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85 $Status = IsNucleicAcid($NucleicAcidID);</div>
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86 <p>Returns 1 or 0 based on whether it's a known nucleic acid ID.</p>
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87 </dd>
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88 <dt><strong><a name="isnucleicacidproperty" class="item"><strong>IsNucleicAcidProperty</strong></a></strong></dt>
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89 <dd>
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90 <div class="OptionsBox">
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91 $Status = IsNucleicAcid($PropertyName);</div>
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92 <p>Returns 1 or 0 based on whether it's a known nucleic acid property name.</p>
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93 </dd>
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94 <dt><strong><a name="isnucleicacidtype" class="item"><strong>IsNucleicAcidType</strong></a></strong></dt>
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95 <dd>
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96 <div class="OptionsBox">
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97 $Status = IsNucleicAcidType();</div>
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98 <p>Returns 1 or 0 based on whether it's a known nucleic acid type.</p>
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99 </dd>
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100 </dl>
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101 <p>
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102 </p>
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103 <h2>AUTHOR</h2>
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104 <p><a href="mailto:msud@san.rr.com">Manish Sud</a></p>
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105 <p>
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106 </p>
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107 <h2>SEE ALSO</h2>
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108 <p><a href="./AminoAcids.html">AminoAcids.pm</a>, <a href="./PeriodicTable.html">PeriodicTable.pm</a>
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109 </p>
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110 <p>
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111 </p>
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112 <h2>COPYRIGHT</h2>
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113 <p>Copyright (C) 2015 Manish Sud. All rights reserved.</p>
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114 <p>This file is part of MayaChemTools.</p>
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115 <p>MayaChemTools is free software; you can redistribute it and/or modify it under
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116 the terms of the GNU Lesser General Public License as published by the Free
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117 Software Foundation; either version 3 of the License, or (at your option)
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118 any later version.</p>
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119 <p> </p><p> </p><div class="DocNav">
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120 <table width="100%" border=0 cellpadding=0 cellspacing=2>
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121 <tr align="left" valign="top"><td width="33%" align="left"><a href="./MoleculeFileIO.html" title="MoleculeFileIO.html">Previous</a> <a href="./index.html" title="Table of Contents">TOC</a> <a href="./ObjectProperty.html" title="ObjectProperty.html">Next</a></td><td width="34%" align="middle"><strong>March 29, 2015</strong></td><td width="33%" align="right"><strong>NucleicAcids.pm</strong></td></tr>
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