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| date | Wed, 20 Jan 2016 09:23:18 -0500 |
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<html> <head> <title>MayaChemTools:Code:InfoFingerprintsFiles.pl</title> <meta http-equiv="content-type" content="text/html;charset=utf-8"> <link rel="stylesheet" type="text/css" href="../../../css/MayaChemToolsCode.css"> </head> <body leftmargin="20" rightmargin="20" topmargin="10" bottommargin="10"> <br/> <center> <a href="http://www.mayachemtools.org" title="MayaChemTools Home"><img src="../../../images/MayaChemToolsLogo.gif" border="0" alt="MayaChemTools"></a> </center> <br/> <pre> 1 #!/usr/bin/perl -w 2 <span class="c">#</span> 3 <span class="c"># $RCSfile: InfoFingerprintsFiles.pl,v $</span> 4 <span class="c"># $Date: 2015/02/28 20:46:20 $</span> 5 <span class="c"># $Revision: 1.20 $</span> 6 <span class="c">#</span> 7 <span class="c"># Author: Manish Sud <msud@san.rr.com></span> 8 <span class="c">#</span> 9 <span class="c"># Copyright (C) 2015 Manish Sud. All rights reserved.</span> 10 <span class="c">#</span> 11 <span class="c"># This file is part of MayaChemTools.</span> 12 <span class="c">#</span> 13 <span class="c"># MayaChemTools is free software; you can redistribute it and/or modify it under</span> 14 <span class="c"># the terms of the GNU Lesser General Public License as published by the Free</span> 15 <span class="c"># Software Foundation; either version 3 of the License, or (at your option) any</span> 16 <span class="c"># later version.</span> 17 <span class="c">#</span> 18 <span class="c"># MayaChemTools is distributed in the hope that it will be useful, but without</span> 19 <span class="c"># any warranty; without even the implied warranty of merchantability of fitness</span> 20 <span class="c"># for a particular purpose. See the GNU Lesser General Public License for more</span> 21 <span class="c"># details.</span> 22 <span class="c">#</span> 23 <span class="c"># You should have received a copy of the GNU Lesser General Public License</span> 24 <span class="c"># along with MayaChemTools; if not, see <http://www.gnu.org/licenses/> or</span> 25 <span class="c"># write to the Free Software Foundation Inc., 59 Temple Place, Suite 330,</span> 26 <span class="c"># Boston, MA, 02111-1307, USA.</span> 27 <span class="c">#</span> 28 29 <span class="k">use</span> <span class="w">strict</span><span class="sc">;</span> 30 <span class="k">use</span> <span class="w">FindBin</span><span class="sc">;</span> <span class="k">use</span> <span class="w">lib</span> <span class="q">"$FindBin::Bin/../lib"</span><span class="sc">;</span> 31 <span class="k">use</span> <span class="w">Getopt::Long</span><span class="sc">;</span> 32 <span class="k">use</span> <span class="w">File::Basename</span><span class="sc">;</span> 33 <span class="k">use</span> <span class="w">Text::ParseWords</span><span class="sc">;</span> 34 <span class="k">use</span> <span class="w">Benchmark</span><span class="sc">;</span> 35 <span class="k">use</span> <span class="w">FileUtil</span><span class="sc">;</span> 36 <span class="k">use</span> <span class="w">TextUtil</span><span class="sc">;</span> 37 <span class="k">use</span> <span class="w">Fingerprints::FingerprintsFileUtil</span><span class="sc">;</span> 38 <span class="k">use</span> <span class="w">Fingerprints::FingerprintsStringUtil</span><span class="sc">;</span> 39 40 <span class="k">my</span><span class="s">(</span><span class="i">$ScriptName</span><span class="cm">,</span> <span class="i">%Options</span><span class="cm">,</span> <span class="i">$StartTime</span><span class="cm">,</span> <span class="i">$EndTime</span><span class="cm">,</span> <span class="i">$TotalTime</span><span class="s">)</span><span class="sc">;</span> 41 42 <span class="c"># Autoflush STDOUT</span> 43 <span class="i">$|</span> = <span class="n">1</span><span class="sc">;</span> 44 45 <span class="c"># Starting message...</span> 46 <span class="i">$ScriptName</span> = <span class="i">basename</span><span class="s">(</span><span class="i">$0</span><span class="s">)</span><span class="sc">;</span> 47 <span class="k">print</span> <span class="q">"\n$ScriptName: Starting...\n\n"</span><span class="sc">;</span> 48 <span class="i">$StartTime</span> = <span class="w">new</span> <span class="w">Benchmark</span><span class="sc">;</span> 49 50 <span class="c"># Get the options and setup script...</span> 51 <span class="i">SetupScriptUsage</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> 52 <span class="k">if</span> <span class="s">(</span><span class="i">$Options</span>{<span class="w">help</span>} || <span class="i">@ARGV</span> < <span class="n">1</span><span class="s">)</span> <span class="s">{</span> 53 <span class="k">die</span> <span class="i">GetUsageFromPod</span><span class="s">(</span><span class="q">"$FindBin::Bin/$ScriptName"</span><span class="s">)</span><span class="sc">;</span> 54 <span class="s">}</span> 55 56 <span class="k">my</span><span class="s">(</span><span class="i">@FingerprintsFilesList</span><span class="s">)</span><span class="sc">;</span> 57 <span class="i">@FingerprintsFilesList</span> = <span class="i">ExpandFileNames</span><span class="s">(</span>\<span class="i">@ARGV</span><span class="cm">,</span> <span class="q">"sdf sd fpf fp csv tsv"</span><span class="s">)</span><span class="sc">;</span> 58 59 <span class="c"># Process options...</span> 60 <span class="k">print</span> <span class="q">"Processing options...\n"</span><span class="sc">;</span> 61 <span class="k">my</span><span class="s">(</span><span class="i">%OptionsInfo</span><span class="s">)</span><span class="sc">;</span> 62 <span class="i">ProcessOptions</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> 63 64 <span class="c"># Setup information about input files...</span> 65 <span class="k">print</span> <span class="q">"Checking input fingerprints file(s)...\n"</span><span class="sc">;</span> 66 <span class="k">my</span><span class="s">(</span><span class="i">%FingerprintsFilesInfo</span><span class="s">)</span><span class="sc">;</span> 67 <span class="i">RetrieveFingerprintsFilesInfo</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> 68 69 <span class="c"># Process input files..</span> 70 <span class="k">my</span><span class="s">(</span><span class="i">$FileIndex</span><span class="s">)</span><span class="sc">;</span> 71 <span class="k">if</span> <span class="s">(</span><span class="i">@FingerprintsFilesList</span> > <span class="n">1</span><span class="s">)</span> <span class="s">{</span> 72 <span class="k">print</span> <span class="q">"\nProcessing fingerprints files...\n"</span><span class="sc">;</span> 73 <span class="s">}</span> 74 <span class="k">for</span> <span class="i">$FileIndex</span> <span class="s">(</span><span class="n">0</span> .. <span class="i">$#FingerprintsFilesList</span><span class="s">)</span> <span class="s">{</span> 75 <span class="k">if</span> <span class="s">(</span><span class="i">$FingerprintsFilesInfo</span>{<span class="w">FileOkay</span>}[<span class="i">$FileIndex</span>]<span class="s">)</span> <span class="s">{</span> 76 <span class="k">print</span> <span class="q">"\nProcessing file $FingerprintsFilesList[$FileIndex]...\n"</span><span class="sc">;</span> 77 <span class="i">ListFingerprintsFileInfo</span><span class="s">(</span><span class="i">$FileIndex</span><span class="s">)</span><span class="sc">;</span> 78 <span class="s">}</span> 79 <span class="s">}</span> 80 <span class="i">ListTotalSizeOfFiles</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> 81 82 <span class="k">print</span> <span class="q">"\n$ScriptName:Done...\n\n"</span><span class="sc">;</span> 83 84 <span class="i">$EndTime</span> = <span class="w">new</span> <span class="w">Benchmark</span><span class="sc">;</span> 85 <span class="i">$TotalTime</span> = <span class="w">timediff</span> <span class="s">(</span><span class="i">$EndTime</span><span class="cm">,</span> <span class="i">$StartTime</span><span class="s">)</span><span class="sc">;</span> 86 <span class="k">print</span> <span class="q">"Total time: "</span><span class="cm">,</span> <span class="i">timestr</span><span class="s">(</span><span class="i">$TotalTime</span><span class="s">)</span><span class="cm">,</span> <span class="q">"\n"</span><span class="sc">;</span> 87 88 <span class="c">###############################################################################</span> 89 90 <span class="c"># List approptiate information...</span> 91 <span class="c">#</span> <a name="ListFingerprintsFileInfo-"></a> 92 <span class="k">sub </span><span class="m">ListFingerprintsFileInfo</span> <span class="s">{</span> 93 <span class="k">my</span><span class="s">(</span><span class="i">$FileIndex</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> 94 <span class="k">my</span><span class="s">(</span><span class="i">$FileName</span><span class="cm">,</span> <span class="i">$FingerprintsFileIO</span><span class="cm">,</span> <span class="i">$InvalidFingerprintsFileData</span><span class="cm">,</span> <span class="i">$InvalidFingerprintsData</span><span class="cm">,</span> <span class="i">$DataEntryCount</span><span class="cm">,</span> <span class="i">$ValidDataEntryCount</span><span class="cm">,</span> <span class="i">$InvalidDataEntryCount</span><span class="cm">,</span> <span class="i">$MissingDataEntryCount</span><span class="cm">,</span> <span class="i">$BitVectorDataEntryCount</span><span class="cm">,</span> <span class="i">$VectorDataEntryCount</span><span class="cm">,</span> <span class="i">$FingerprintsObject</span><span class="cm">,</span> <span class="i">$FingerprintsType</span><span class="cm">,</span> <span class="i">$TotalBitDensity</span><span class="cm">,</span> <span class="i">$FileType</span><span class="cm">,</span> <span class="i">$DataEntryLabel</span><span class="s">)</span><span class="sc">;</span> 95 96 <span class="i">$FileType</span> = <span class="i">$FingerprintsFilesInfo</span>{<span class="w">FileType</span>}[<span class="i">$FileIndex</span>]<span class="sc">;</span> 97 <span class="i">$DataEntryLabel</span> = <span class="s">(</span><span class="i">$FileType</span> =~ <span class="q">/^SD$/i</span><span class="s">)</span> ? <span class="q">'compounds'</span> <span class="co">:</span> <span class="q">'lines'</span><span class="sc">;</span> 98 99 <span class="s">(</span><span class="i">$DataEntryCount</span><span class="cm">,</span> <span class="i">$ValidDataEntryCount</span><span class="cm">,</span> <span class="i">$InvalidDataEntryCount</span><span class="cm">,</span> <span class="i">$MissingDataEntryCount</span><span class="cm">,</span> <span class="i">$BitVectorDataEntryCount</span><span class="cm">,</span> <span class="i">$VectorDataEntryCount</span><span class="cm">,</span> <span class="i">$TotalBitDensity</span><span class="s">)</span> = <span class="s">(</span><span class="n">0</span><span class="s">)</span> x <span class="n">7</span><span class="sc">;</span> 100 101 <span class="i">$FingerprintsFileIO</span> = <span class="i">Fingerprints::FingerprintsFileUtil::NewFingerprintsFileIO</span><span class="s">(</span><span class="i">%</span>{<span class="i">$FingerprintsFilesInfo</span>{<span class="w">FingerprintsFileIOParameters</span>}[<span class="i">$FileIndex</span>]}<span class="s">)</span><span class="sc">;</span> 102 <span class="i">$FingerprintsFileIO</span><span class="i">->Open</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> 103 104 <span class="i">$InvalidFingerprintsFileData</span> = <span class="i">$FingerprintsFileIO</span><span class="i">->IsFingerprintsFileDataValid</span><span class="s">(</span><span class="s">)</span> ? <span class="n">0</span> <span class="co">:</span> <span class="n">1</span><span class="sc">;</span> 105 106 <span class="j">FINGERPRINTS:</span> <span class="k">while</span> <span class="s">(</span><span class="i">$FingerprintsFileIO</span><span class="i">->Read</span><span class="s">(</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span> 107 <span class="i">$DataEntryCount</span>++<span class="sc">;</span> 108 109 <span class="c"># Missing data...</span> 110 <span class="k">if</span> <span class="s">(</span><span class="i">$InvalidFingerprintsFileData</span><span class="s">)</span> <span class="s">{</span> 111 <span class="i">$MissingDataEntryCount</span>++<span class="sc">;</span> 112 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ValidateData</span>} || <span class="i">$OptionsInfo</span>{<span class="w">CountEmptyFingerprints</span>}<span class="s">)</span> <span class="s">{</span> 113 <span class="i">ListEmptyOrInvalidFingerprintsDataInfo</span><span class="s">(</span><span class="q">'EmptyData'</span><span class="cm">,</span> <span class="i">$FingerprintsFileIO</span><span class="cm">,</span> <span class="i">$FileType</span><span class="s">)</span><span class="sc">;</span> 114 <span class="s">}</span> 115 <span class="k">next</span> <span class="j">FINGERPRINTS</span><span class="sc">;</span> 116 <span class="s">}</span> 117 <span class="i">$InvalidFingerprintsData</span> = <span class="i">$FingerprintsFileIO</span><span class="i">->IsFingerprintsDataValid</span><span class="s">(</span><span class="s">)</span> ? <span class="n">0</span> <span class="co">:</span> <span class="n">1</span><span class="sc">;</span> 118 119 <span class="c"># Invalid data...</span> 120 <span class="k">if</span> <span class="s">(</span><span class="i">$InvalidFingerprintsData</span><span class="s">)</span> <span class="s">{</span> 121 <span class="i">$InvalidDataEntryCount</span>++<span class="sc">;</span> 122 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ValidateData</span>}<span class="s">)</span> <span class="s">{</span> 123 <span class="i">ListEmptyOrInvalidFingerprintsDataInfo</span><span class="s">(</span><span class="q">'InvalidData'</span><span class="cm">,</span> <span class="i">$FingerprintsFileIO</span><span class="cm">,</span> <span class="i">$FileType</span><span class="s">)</span><span class="sc">;</span> 124 <span class="s">}</span> 125 <span class="k">next</span> <span class="j">FINGERPRINTS</span><span class="sc">;</span> 126 <span class="s">}</span> 127 <span class="i">$ValidDataEntryCount</span>++<span class="sc">;</span> 128 129 <span class="i">$FingerprintsObject</span> = <span class="i">$FingerprintsFileIO</span><span class="i">->GetFingerprints</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> 130 <span class="i">$FingerprintsType</span> = <span class="i">$FingerprintsObject</span><span class="i">->GetVectorType</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> 131 132 <span class="k">if</span> <span class="s">(</span><span class="i">$FingerprintsType</span> =~ <span class="q">/^FingerprintsBitVector$/i</span><span class="s">)</span> <span class="s">{</span> 133 <span class="i">$BitVectorDataEntryCount</span>++<span class="sc">;</span> 134 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListAverageBitDensity</span>}<span class="s">)</span> <span class="s">{</span> 135 <span class="i">$TotalBitDensity</span> += <span class="i">$FingerprintsObject</span><span class="i">->GetFingerprintsBitDensity</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> 136 <span class="s">}</span> 137 <span class="s">}</span> 138 <span class="k">elsif</span> <span class="s">(</span><span class="i">$FingerprintsType</span> =~ <span class="q">/^FingerprintsVector$/i</span><span class="s">)</span> <span class="s">{</span> 139 <span class="i">$VectorDataEntryCount</span>++<span class="sc">;</span> 140 <span class="s">}</span> 141 142 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsDataEntryInfo</span>}<span class="s">)</span> <span class="s">{</span> 143 <span class="i">ListFingerprintsDataEntryInfo</span><span class="s">(</span><span class="i">$FingerprintsFileIO</span><span class="cm">,</span> <span class="i">$FileType</span><span class="s">)</span><span class="sc">;</span> 144 <span class="s">}</span> 145 146 <span class="s">}</span> 147 <span class="i">$FingerprintsFileIO</span><span class="i">->Close</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> 148 149 <span class="k">print</span> <span class="q">"\nFingerprints file type: $FileType\n"</span><span class="sc">;</span> 150 <span class="k">if</span> <span class="s">(</span><span class="i">$FileType</span> =~ <span class="q">/^SD$/i</span><span class="s">)</span> <span class="s">{</span> 151 <span class="k">print</span> <span class="q">"Number of compounds: $DataEntryCount\n"</span><span class="sc">;</span> 152 <span class="s">}</span> 153 <span class="k">else</span> <span class="s">{</span> 154 <span class="k">print</span> <span class="q">"Number of data lines: $DataEntryCount\n"</span><span class="sc">;</span> 155 <span class="s">}</span> 156 157 <span class="i">ListFileTypeHeaderInfo</span><span class="s">(</span><span class="i">$FingerprintsFileIO</span><span class="cm">,</span> <span class="i">$FileType</span><span class="s">)</span><span class="sc">;</span> 158 159 <span class="k">print</span> <span class="q">"\nNumber of $DataEntryLabel with valid fingerprints string data: $ValidDataEntryCount\n"</span><span class="sc">;</span> 160 <span class="k">print</span> <span class="q">"Number of $DataEntryLabel with bit-vector fingerprints string data: $BitVectorDataEntryCount\n"</span><span class="sc">;</span> 161 <span class="k">print</span> <span class="q">"Number of $DataEntryLabel with vector fingerprints string data: $VectorDataEntryCount\n"</span><span class="sc">;</span> 162 163 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">CountEmptyFingerprints</span>}<span class="s">)</span> <span class="s">{</span> 164 <span class="k">print</span> <span class="q">"Number of $DataEntryLabel with missing fingerprints data: $MissingDataEntryCount\n"</span><span class="sc">;</span> 165 <span class="k">print</span> <span class="q">"Number of $DataEntryLabel with invalid fingerprints data: $InvalidDataEntryCount\n"</span><span class="sc">;</span> 166 <span class="s">}</span> 167 168 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListAverageBitDensity</span>} && <span class="i">$BitVectorDataEntryCount</span><span class="s">)</span> <span class="s">{</span> 169 <span class="k">my</span><span class="s">(</span><span class="i">$AverageBitDensity</span><span class="s">)</span><span class="sc">;</span> 170 <span class="i">$AverageBitDensity</span> = <span class="i">$TotalBitDensity</span>/<span class="i">$BitVectorDataEntryCount</span><span class="sc">;</span> 171 <span class="i">$AverageBitDensity</span> = <span class="k">sprintf</span><span class="s">(</span><span class="q">"%.2f"</span><span class="cm">,</span> <span class="i">$AverageBitDensity</span><span class="s">)</span> + <span class="n">0</span><span class="sc">;</span> 172 <span class="k">print</span> <span class="q">"\nAverage bit density: $AverageBitDensity\n"</span><span class="sc">;</span> 173 <span class="s">}</span> 174 175 176 <span class="c"># File size and modification information...</span> 177 <span class="k">print</span> <span class="q">"\nFile size: "</span><span class="cm">,</span> <span class="i">FormatFileSize</span><span class="s">(</span><span class="i">$FingerprintsFilesInfo</span>{<span class="w">FileSize</span>}[<span class="i">$FileIndex</span>]<span class="s">)</span><span class="cm">,</span> <span class="q">" \n"</span><span class="sc">;</span> 178 <span class="k">print</span> <span class="q">"Last modified: "</span><span class="cm">,</span> <span class="i">$FingerprintsFilesInfo</span>{<span class="w">FileLastModified</span>}[<span class="i">$FileIndex</span>]<span class="cm">,</span> <span class="q">" \n"</span><span class="sc">;</span> 179 <span class="s">}</span> 180 181 <span class="c"># List empty or invalid fingerprints file data information...</span> 182 <span class="c">#</span> <a name="ListEmptyOrInvalidFingerprintsDataInfo-"></a> 183 <span class="k">sub </span><span class="m">ListEmptyOrInvalidFingerprintsDataInfo</span> <span class="s">{</span> 184 <span class="k">my</span><span class="s">(</span><span class="i">$Mode</span><span class="cm">,</span> <span class="i">$FingerprintsFileIO</span><span class="cm">,</span> <span class="i">$FileType</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> 185 <span class="k">my</span><span class="s">(</span><span class="i">$ModeInfo</span><span class="s">)</span><span class="sc">;</span> 186 187 <span class="i">$ModeInfo</span> = <span class="s">(</span><span class="i">$Mode</span> =~ <span class="q">/^EmptyData$/i</span><span class="s">)</span> ? <span class="q">"no"</span> <span class="co">:</span> <span class="q">"invalid"</span><span class="sc">;</span> 188 189 <span class="k">if</span> <span class="s">(</span><span class="i">$FileType</span> =~ <span class="q">/^SD$/i</span><span class="s">)</span> <span class="s">{</span> 190 <span class="k">my</span><span class="s">(</span><span class="i">$CmpdNum</span><span class="cm">,</span> <span class="i">$CmpdString</span><span class="s">)</span><span class="sc">;</span> 191 192 <span class="i">$CmpdNum</span> = <span class="i">$FingerprintsFileIO</span><span class="i">->GetCompoundNum</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> 193 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">DetailLevel</span>} >= <span class="n">3</span> <span class="s">)</span> <span class="s">{</span> 194 <span class="i">$CmpdString</span> = <span class="i">$FingerprintsFileIO</span><span class="i">->GetCompoundString</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> 195 <span class="k">print</span> <span class="q">"Compound number $CmpdNum contains $ModeInfo fingerprints data: $CmpdString \n"</span><span class="sc">;</span> 196 <span class="s">}</span> 197 <span class="k">elsif</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">DetailLevel</span>} >= <span class="n">1</span> <span class="s">)</span> <span class="s">{</span> 198 <span class="k">print</span> <span class="q">"Compound number $CmpdNum contains $ModeInfo fingerprints data...\n"</span><span class="sc">;</span> 199 <span class="s">}</span> 200 <span class="s">}</span> 201 <span class="k">else</span> <span class="s">{</span> 202 <span class="k">my</span><span class="s">(</span><span class="i">$LineNum</span><span class="cm">,</span> <span class="i">$DataLine</span><span class="s">)</span><span class="sc">;</span> 203 204 <span class="i">$LineNum</span> = <span class="i">$FingerprintsFileIO</span><span class="i">->GetLineNum</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> 205 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">DetailLevel</span>} >= <span class="n">3</span> <span class="s">)</span> <span class="s">{</span> 206 <span class="i">$DataLine</span> = <span class="i">$FingerprintsFileIO</span><span class="i">->GetDataLine</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> 207 <span class="k">print</span> <span class="q">"Data line number $LineNum contains $ModeInfo fingerprints data: $DataLine \n"</span><span class="sc">;</span> 208 <span class="s">}</span> 209 <span class="k">elsif</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">DetailLevel</span>} >= <span class="n">1</span> <span class="s">)</span> <span class="s">{</span> 210 <span class="k">print</span> <span class="q">"Data line number $LineNum contains $ModeInfo fingerprints data...\n"</span><span class="sc">;</span> 211 <span class="s">}</span> 212 <span class="s">}</span> 213 <span class="s">}</span> 214 215 <span class="c"># List detailed information about fingerprints data entry...</span> 216 <span class="c">#</span> <a name="ListFingerprintsDataEntryInfo-"></a> 217 <span class="k">sub </span><span class="m">ListFingerprintsDataEntryInfo</span> <span class="s">{</span> 218 <span class="k">my</span><span class="s">(</span><span class="i">$FingerprintsFileIO</span><span class="cm">,</span> <span class="i">$FileType</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> 219 <span class="k">my</span><span class="s">(</span><span class="i">$FingerprintsObject</span><span class="cm">,</span> <span class="i">$FingerprintsString</span><span class="cm">,</span> <span class="i">$FingerprintsType</span><span class="cm">,</span> <span class="i">$FingerprintsDescription</span><span class="cm">,</span> <span class="i">$FingerprintsSize</span><span class="cm">,</span> <span class="i">$FingerprintsBitStringFormat</span><span class="cm">,</span> <span class="i">$FingerprintsBitOrder</span><span class="cm">,</span> <span class="i">$BitDensity</span><span class="cm">,</span> <span class="i">$NumOfOnBits</span><span class="cm">,</span> <span class="i">$FingerprintsVectorValuesType</span><span class="cm">,</span> <span class="i">$FingerprintsVectorValuesFormat</span><span class="cm">,</span> <span class="i">$NumOfNonZeroValues</span><span class="s">)</span><span class="sc">;</span> 220 221 <span class="i">$FingerprintsObject</span> = <span class="i">$FingerprintsFileIO</span><span class="i">->GetFingerprints</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> 222 <span class="i">$FingerprintsString</span> = <span class="i">$FingerprintsFileIO</span><span class="i">->GetFingerprintsString</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> 223 224 <span class="i">$FingerprintsType</span> = <span class="i">$FingerprintsObject</span><span class="i">->GetVectorType</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> 225 226 <span class="k">if</span> <span class="s">(</span><span class="i">$FingerprintsType</span> =~ <span class="q">/^FingerprintsBitVector$/i</span><span class="s">)</span> <span class="s">{</span> 227 <span class="i">$BitDensity</span> = <span class="q">''</span><span class="sc">;</span> 228 <span class="i">$NumOfOnBits</span> = <span class="q">''</span><span class="sc">;</span> 229 230 <span class="s">(</span><span class="i">$FingerprintsType</span><span class="cm">,</span> <span class="i">$FingerprintsDescription</span><span class="cm">,</span> <span class="i">$FingerprintsSize</span><span class="cm">,</span> <span class="i">$FingerprintsBitStringFormat</span><span class="cm">,</span> <span class="i">$FingerprintsBitOrder</span><span class="s">)</span> = <span class="i">Fingerprints::FingerprintsStringUtil::GetFingerprintsStringValues</span><span class="s">(</span><span class="i">$FingerprintsString</span><span class="s">)</span><span class="sc">;</span> 231 232 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListBitDensity</span>} || <span class="i">$OptionsInfo</span>{<span class="w">ListNumOfOnBits</span>}<span class="s">)</span> <span class="s">{</span> 233 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListBitDensity</span>}<span class="s">)</span> <span class="s">{</span> 234 <span class="i">$BitDensity</span> = <span class="i">$FingerprintsObject</span><span class="i">->GetFingerprintsBitDensity</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> 235 <span class="s">}</span> 236 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListNumOfOnBits</span>}<span class="s">)</span> <span class="s">{</span> 237 <span class="i">$NumOfOnBits</span> = <span class="i">$FingerprintsObject</span><span class="i">->GetNumOfSetBits</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> 238 <span class="s">}</span> 239 <span class="s">}</span> 240 <span class="s">}</span> 241 <span class="k">elsif</span> <span class="s">(</span><span class="i">$FingerprintsType</span> =~ <span class="q">/^FingerprintsVector$/i</span><span class="s">)</span> <span class="s">{</span> 242 <span class="i">$NumOfNonZeroValues</span> = <span class="q">''</span><span class="sc">;</span> 243 244 <span class="s">(</span><span class="i">$FingerprintsType</span><span class="cm">,</span> <span class="i">$FingerprintsDescription</span><span class="cm">,</span> <span class="i">$FingerprintsSize</span><span class="cm">,</span> <span class="i">$FingerprintsVectorValuesType</span><span class="cm">,</span> <span class="i">$FingerprintsVectorValuesFormat</span><span class="s">)</span> = <span class="i">Fingerprints::FingerprintsStringUtil::GetFingerprintsStringValues</span><span class="s">(</span><span class="i">$FingerprintsString</span><span class="s">)</span><span class="sc">;</span> 245 246 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListNumOfNonZeroValues</span>}<span class="s">)</span> <span class="s">{</span> 247 <span class="k">if</span> <span class="s">(</span><span class="i">$FingerprintsVectorValuesType</span> =~ <span class="q">/^AlphaNumericalValues$/i</span><span class="s">)</span> <span class="s">{</span> 248 <span class="i">$NumOfNonZeroValues</span> = <span class="q">'NA'</span><span class="sc">;</span> 249 <span class="s">}</span> 250 <span class="k">else</span> <span class="s">{</span> 251 <span class="i">$NumOfNonZeroValues</span> = <span class="i">$FingerprintsObject</span><span class="i">->GetNumOfNonZeroValues</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> 252 <span class="s">}</span> 253 <span class="s">}</span> 254 <span class="s">}</span> 255 256 <span class="k">if</span> <span class="s">(</span><span class="i">$FileType</span> =~ <span class="q">/^SD$/i</span><span class="s">)</span> <span class="s">{</span> 257 <span class="k">print</span> <span class="q">"Compound number: "</span> . <span class="i">$FingerprintsFileIO</span><span class="i">->GetCompoundNum</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> 258 <span class="s">}</span> 259 <span class="k">else</span> <span class="s">{</span> 260 <span class="k">print</span> <span class="q">"Data line number: "</span> . <span class="i">$FingerprintsFileIO</span><span class="i">->GetLineNum</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> 261 <span class="s">}</span> 262 263 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsType</span>}<span class="s">)</span> <span class="s">{</span> 264 <span class="k">print</span> <span class="q">"; FPType: $FingerprintsType"</span><span class="sc">;</span> 265 <span class="s">}</span> 266 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsDescription</span>}<span class="s">)</span> <span class="s">{</span> 267 <span class="k">print</span> <span class="q">"; FPDescription: $FingerprintsDescription"</span><span class="sc">;</span> 268 <span class="s">}</span> 269 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsSize</span>}<span class="s">)</span> <span class="s">{</span> 270 <span class="k">print</span> <span class="q">"; FPSize: $FingerprintsSize"</span><span class="sc">;</span> 271 <span class="s">}</span> 272 273 <span class="k">if</span> <span class="s">(</span><span class="i">$FingerprintsType</span> =~ <span class="q">/^FingerprintsBitVector$/i</span><span class="s">)</span> <span class="s">{</span> 274 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsBitStringFormat</span>}<span class="s">)</span> <span class="s">{</span> 275 <span class="k">print</span> <span class="q">"; FPBitStringFormat: $FingerprintsBitStringFormat"</span><span class="sc">;</span> 276 <span class="s">}</span> 277 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsBitOrder</span>}<span class="s">)</span> <span class="s">{</span> 278 <span class="k">print</span> <span class="q">"; FPBitOrder: $FingerprintsBitOrder"</span><span class="sc">;</span> 279 <span class="s">}</span> 280 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListBitDensity</span>}<span class="s">)</span> <span class="s">{</span> 281 <span class="k">print</span> <span class="q">"; BitDensity: $BitDensity"</span><span class="sc">;</span> 282 <span class="s">}</span> 283 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListNumOfOnBits</span>}<span class="s">)</span> <span class="s">{</span> 284 <span class="k">print</span> <span class="q">"; NumOfOnBits: $NumOfOnBits"</span><span class="sc">;</span> 285 <span class="s">}</span> 286 <span class="s">}</span> 287 <span class="k">elsif</span> <span class="s">(</span><span class="i">$FingerprintsType</span> =~ <span class="q">/^FingerprintsVector$/i</span><span class="s">)</span> <span class="s">{</span> 288 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsVectorValuesType</span>}<span class="s">)</span> <span class="s">{</span> 289 <span class="k">print</span> <span class="q">"; FPVectorValuesType: $FingerprintsVectorValuesType"</span><span class="sc">;</span> 290 <span class="s">}</span> 291 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsVectorValuesFormat</span>}<span class="s">)</span> <span class="s">{</span> 292 <span class="k">print</span> <span class="q">"; FPVectorValuesFormat: $FingerprintsVectorValuesFormat"</span><span class="sc">;</span> 293 <span class="s">}</span> 294 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListNumOfNonZeroValues</span>}<span class="s">)</span> <span class="s">{</span> 295 <span class="k">print</span> <span class="q">"; NumOfNonZeroValues: $NumOfNonZeroValues"</span><span class="sc">;</span> 296 <span class="s">}</span> 297 <span class="s">}</span> 298 <span class="k">print</span> <span class="q">"\n"</span><span class="sc">;</span> 299 <span class="s">}</span> 300 301 <span class="c"># List file type header information...</span> 302 <span class="c">#</span> <a name="ListFileTypeHeaderInfo-"></a> 303 <span class="k">sub </span><span class="m">ListFileTypeHeaderInfo</span> <span class="s">{</span> 304 <span class="k">my</span><span class="s">(</span><span class="i">$FingerprintsFileIO</span><span class="cm">,</span> <span class="i">$FileType</span><span class="s">)</span> = <span class="i">@_</span><span class="sc">;</span> 305 <span class="k">my</span><span class="s">(</span><span class="i">$Key</span><span class="cm">,</span> <span class="i">$Value</span><span class="cm">,</span> <span class="i">@DataColLabels</span><span class="cm">,</span> <span class="i">%HeaderDataKeysAndValues</span><span class="s">)</span><span class="sc">;</span> 306 307 <span class="k">if</span> <span class="s">(</span><span class="i">$FileType</span> =~ <span class="q">/^Text$/i</span><span class="s">)</span> <span class="s">{</span> 308 <span class="i">@DataColLabels</span> = <span class="i">$FingerprintsFileIO</span><span class="i">->GetDataColLabels</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> 309 <span class="k">print</span> <span class="q">"Number of columns: "</span> . <span class="k">scalar</span> <span class="i">@DataColLabels</span> . <span class="q">"\n"</span><span class="sc">;</span> 310 <span class="k">print</span> <span class="q">"Column labels: "</span><span class="cm">,</span> <span class="i">JoinWords</span><span class="s">(</span>\<span class="i">@DataColLabels</span><span class="cm">,</span> <span class="q">", "</span><span class="cm">,</span> <span class="n">1</span><span class="s">)</span><span class="cm">,</span> <span class="q">"\n"</span><span class="sc">;</span> 311 <span class="s">}</span> 312 <span class="k">elsif</span> <span class="s">(</span><span class="i">$FileType</span> =~ <span class="q">/^FP$/i</span><span class="s">)</span> <span class="s">{</span> 313 <span class="i">%HeaderDataKeysAndValues</span> = <span class="i">$FingerprintsFileIO</span><span class="i">->GetHeaderDataKeysAndValues</span><span class="s">(</span><span class="s">)</span><span class="sc">;</span> 314 315 <span class="k">print</span> <span class="q">"\nFP file header data keys and values: \n#\n"</span><span class="sc">;</span> 316 <span class="k">for</span> <span class="i">$Key</span> <span class="s">(</span><span class="i">$FingerprintsFileIO</span><span class="i">->GetHeaderDataKeys</span><span class="s">(</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span> 317 <span class="i">$Value</span> = <span class="i">$HeaderDataKeysAndValues</span>{<span class="i">$Key</span>}<span class="sc">;</span> 318 <span class="k">print</span> <span class="q">"# $Key = $Value\n"</span><span class="sc">;</span> 319 <span class="s">}</span> 320 <span class="k">print</span> <span class="q">"#\n"</span><span class="sc">;</span> 321 <span class="s">}</span> 322 <span class="s">}</span> 323 324 <span class="c"># Total size of all the fiels...</span> <a name="ListTotalSizeOfFiles-"></a> 325 <span class="k">sub </span><span class="m">ListTotalSizeOfFiles</span> <span class="s">{</span> 326 <span class="k">my</span><span class="s">(</span><span class="i">$FileOkayCount</span><span class="cm">,</span> <span class="i">$TotalSize</span><span class="cm">,</span> <span class="i">$Index</span><span class="s">)</span><span class="sc">;</span> 327 328 <span class="i">$FileOkayCount</span> = <span class="n">0</span><span class="sc">;</span> 329 <span class="i">$TotalSize</span> = <span class="n">0</span><span class="sc">;</span> 330 331 <span class="k">for</span> <span class="i">$Index</span> <span class="s">(</span><span class="n">0</span> .. <span class="i">$#FingerprintsFilesList</span><span class="s">)</span> <span class="s">{</span> 332 <span class="k">if</span> <span class="s">(</span><span class="i">$FingerprintsFilesList</span>[<span class="i">$Index</span>]<span class="s">)</span> <span class="s">{</span> 333 <span class="i">$FileOkayCount</span>++<span class="sc">;</span> 334 <span class="i">$TotalSize</span> += <span class="i">$FingerprintsFilesInfo</span>{<span class="w">FileSize</span>}[<span class="i">$Index</span>]<span class="sc">;</span> 335 <span class="s">}</span> 336 <span class="s">}</span> 337 <span class="k">if</span> <span class="s">(</span><span class="i">$FileOkayCount</span> > <span class="n">1</span><span class="s">)</span> <span class="s">{</span> 338 <span class="k">print</span> <span class="q">"\nTotal size of $FileOkayCount files: "</span><span class="cm">,</span> <span class="i">FormatFileSize</span><span class="s">(</span><span class="i">$TotalSize</span><span class="s">)</span><span class="cm">,</span> <span class="q">"\n"</span><span class="sc">;</span> 339 <span class="s">}</span> 340 <span class="s">}</span> 341 342 <span class="c"># Retrieve information about fingerprints files...</span> 343 <span class="c">#</span> <a name="RetrieveFingerprintsFilesInfo-"></a> 344 <span class="k">sub </span><span class="m">RetrieveFingerprintsFilesInfo</span> <span class="s">{</span> 345 <span class="k">my</span><span class="s">(</span><span class="i">$FingerprintsFile</span><span class="cm">,</span> <span class="i">$Index</span><span class="cm">,</span> <span class="i">$FileDir</span><span class="cm">,</span> <span class="i">$FileExt</span><span class="cm">,</span> <span class="i">$FileName</span><span class="cm">,</span> <span class="i">$FileType</span><span class="cm">,</span> <span class="i">$InDelim</span><span class="cm">,</span> <span class="i">$ModifiedTimeString</span><span class="cm">,</span> <span class="i">$ModifiedDateString</span><span class="cm">,</span> <span class="i">%FingerprintsFileIOParameters</span><span class="s">)</span><span class="sc">;</span> 346 347 <span class="i">%FingerprintsFilesInfo</span> = <span class="s">(</span><span class="s">)</span><span class="sc">;</span> 348 <span class="i">@</span>{<span class="i">$FingerprintsFilesInfo</span>{<span class="w">FileOkay</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span> 349 <span class="i">@</span>{<span class="i">$FingerprintsFilesInfo</span>{<span class="w">FileType</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span> 350 <span class="i">@</span>{<span class="i">$FingerprintsFilesInfo</span>{<span class="w">FileSize</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span> 351 <span class="i">@</span>{<span class="i">$FingerprintsFilesInfo</span>{<span class="w">FileLastModified</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span> 352 <span class="i">@</span>{<span class="i">$FingerprintsFilesInfo</span>{<span class="w">InDelim</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span> 353 354 <span class="i">@</span>{<span class="i">$FingerprintsFilesInfo</span>{<span class="w">FingerprintsFileIOParameters</span>}} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span> 355 356 <span class="j">FILELIST:</span> <span class="k">for</span> <span class="i">$Index</span> <span class="s">(</span><span class="n">0</span> .. <span class="i">$#FingerprintsFilesList</span><span class="s">)</span> <span class="s">{</span> 357 <span class="i">$FingerprintsFile</span> = <span class="i">$FingerprintsFilesList</span>[<span class="i">$Index</span>]<span class="sc">;</span> 358 359 <span class="i">$FingerprintsFilesInfo</span>{<span class="w">FileOkay</span>}[<span class="i">$Index</span>] = <span class="n">0</span><span class="sc">;</span> 360 <span class="i">$FingerprintsFilesInfo</span>{<span class="w">FileType</span>}[<span class="i">$Index</span>] = <span class="q">''</span><span class="sc">;</span> 361 <span class="i">$FingerprintsFilesInfo</span>{<span class="w">FileSize</span>}[<span class="i">$Index</span>] = <span class="n">0</span><span class="sc">;</span> 362 <span class="i">$FingerprintsFilesInfo</span>{<span class="w">FileLastModified</span>}[<span class="i">$Index</span>] = <span class="q">''</span><span class="sc">;</span> 363 <span class="i">$FingerprintsFilesInfo</span>{<span class="w">InDelim</span>}[<span class="i">$Index</span>] = <span class="q">""</span><span class="sc">;</span> 364 365 <span class="i">%</span>{<span class="i">$FingerprintsFilesInfo</span>{<span class="w">FingerprintsFileIOParameters</span>}[<span class="i">$Index</span>]} = <span class="s">(</span><span class="s">)</span><span class="sc">;</span> 366 367 <span class="i">$FingerprintsFile</span> = <span class="i">$FingerprintsFilesList</span>[<span class="i">$Index</span>]<span class="sc">;</span> 368 <span class="k">if</span> <span class="s">(</span>!<span class="s">(</span><span class="k">-e</span> <span class="i">$FingerprintsFile</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span> 369 <span class="k">warn</span> <span class="q">"Warning: Ignoring file $FingerprintsFile: It doesn't exist\n"</span><span class="sc">;</span> 370 <span class="k">next</span> <span class="j">FILELIST</span><span class="sc">;</span> 371 <span class="s">}</span> 372 373 <span class="i">$FileType</span> = <span class="i">Fingerprints::FingerprintsFileUtil::GetFingerprintsFileType</span><span class="s">(</span><span class="i">$FingerprintsFile</span><span class="s">)</span><span class="sc">;</span> 374 <span class="k">if</span> <span class="s">(</span><span class="i">IsEmpty</span><span class="s">(</span><span class="i">$FileType</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span> 375 <span class="k">warn</span> <span class="q">"Warning: Ignoring file $FingerprintsFile: It's not a fingerprints file\n"</span><span class="sc">;</span> 376 <span class="k">next</span> <span class="j">FILELIST</span><span class="sc">;</span> 377 <span class="s">}</span> 378 379 <span class="i">$FileDir</span> = <span class="q">""</span><span class="sc">;</span> <span class="i">$FileName</span> = <span class="q">""</span><span class="sc">;</span> <span class="i">$FileExt</span> = <span class="q">""</span><span class="sc">;</span> 380 <span class="s">(</span><span class="i">$FileDir</span><span class="cm">,</span> <span class="i">$FileName</span><span class="cm">,</span> <span class="i">$FileExt</span><span class="s">)</span> = <span class="i">ParseFileName</span><span class="s">(</span><span class="i">$FingerprintsFile</span><span class="s">)</span><span class="sc">;</span> 381 382 <span class="i">$InDelim</span> = <span class="s">(</span><span class="i">$FileExt</span> =~ <span class="q">/^tsv$/i</span><span class="s">)</span> ? <span class="q">'Tab'</span> <span class="co">:</span> <span class="i">$OptionsInfo</span>{<span class="w">InDelim</span>}<span class="sc">;</span> 383 384 <span class="c"># Setup FingerprintsFileIO parameters...</span> 385 <span class="i">%FingerprintsFileIOParameters</span> = <span class="s">(</span><span class="s">)</span><span class="sc">;</span> 386 <span class="j">FILEIOPARAMETERS:</span> <span class="s">{</span> 387 <span class="k">if</span> <span class="s">(</span><span class="i">$FileType</span> =~ <span class="q">/^SD$/i</span><span class="s">)</span> <span class="s">{</span> 388 <span class="i">%FingerprintsFileIOParameters</span> = <span class="s">(</span><span class="q">'Name'</span> <span class="cm">=></span> <span class="i">$FingerprintsFile</span><span class="cm">,</span> <span class="q">'Mode'</span> <span class="cm">=></span> <span class="q">'Read'</span><span class="cm">,</span> <span class="q">'ValidateData'</span> <span class="cm">=></span> <span class="i">$OptionsInfo</span>{<span class="w">ValidateData</span>}<span class="cm">,</span> <span class="q">'DetailLevel'</span> <span class="cm">=></span> <span class="n">1</span><span class="cm">,</span> <span class="q">'FingerprintsFieldLabel'</span> <span class="cm">=></span> <span class="i">$OptionsInfo</span>{<span class="w">FingerprintsFieldLabel</span>}<span class="s">)</span><span class="sc">;</span> 389 <span class="k">last</span> <span class="j">FILEIOPARAMETERS</span><span class="sc">;</span> 390 <span class="s">}</span> 391 <span class="k">if</span> <span class="s">(</span><span class="i">$FileType</span> =~ <span class="q">/^FP$/i</span><span class="s">)</span> <span class="s">{</span> 392 <span class="i">%FingerprintsFileIOParameters</span> = <span class="s">(</span><span class="q">'Name'</span> <span class="cm">=></span> <span class="i">$FingerprintsFile</span><span class="cm">,</span> <span class="q">'Mode'</span> <span class="cm">=></span> <span class="q">'Read'</span><span class="cm">,</span> <span class="q">'ValidateData'</span> <span class="cm">=></span> <span class="i">$OptionsInfo</span>{<span class="w">ValidateData</span>}<span class="cm">,</span> <span class="q">'DetailLevel'</span> <span class="cm">=></span> <span class="n">1</span><span class="s">)</span><span class="sc">;</span> 393 <span class="k">last</span> <span class="j">FILEIOPARAMETERS</span><span class="sc">;</span> 394 <span class="s">}</span> 395 <span class="k">if</span> <span class="s">(</span><span class="i">$FileType</span> =~ <span class="q">/^Text$/i</span><span class="s">)</span> <span class="s">{</span> 396 <span class="i">%FingerprintsFileIOParameters</span> = <span class="s">(</span><span class="q">'Name'</span> <span class="cm">=></span> <span class="i">$FingerprintsFile</span><span class="cm">,</span> <span class="q">'Mode'</span> <span class="cm">=></span> <span class="q">'Read'</span><span class="cm">,</span> <span class="q">'ValidateData'</span> <span class="cm">=></span> <span class="i">$OptionsInfo</span>{<span class="w">ValidateData</span>}<span class="cm">,</span> <span class="q">'DetailLevel'</span> <span class="cm">=></span> <span class="n">1</span><span class="cm">,</span> <span class="q">'FingerprintsCol'</span> <span class="cm">=></span> <span class="i">$OptionsInfo</span>{<span class="w">FingerprintsCol</span>}<span class="cm">,</span> <span class="q">'ColMode'</span> <span class="cm">=></span> <span class="i">$OptionsInfo</span>{<span class="w">ColMode</span>}<span class="cm">,</span> <span class="q">'InDelim'</span> <span class="cm">=></span> <span class="i">$OptionsInfo</span>{<span class="w">InDelim</span>}<span class="s">)</span><span class="sc">;</span> 397 <span class="k">last</span> <span class="j">FILEIOPARAMETERS</span><span class="sc">;</span> 398 <span class="s">}</span> 399 <span class="k">warn</span> <span class="q">"Warning: File type for fingerprints file, $FingerprintsFile, is not valid. Supported file types: SD, FP or Text\n"</span><span class="sc">;</span> 400 <span class="k">next</span> <span class="j">FILELIST</span><span class="sc">;</span> 401 <span class="s">}</span> 402 403 <span class="i">$FingerprintsFilesInfo</span>{<span class="w">FileOkay</span>}[<span class="i">$Index</span>] = <span class="n">1</span><span class="sc">;</span> 404 <span class="i">$FingerprintsFilesInfo</span>{<span class="w">FileType</span>}[<span class="i">$Index</span>] = <span class="i">$FileType</span><span class="sc">;</span> 405 406 <span class="i">$FingerprintsFilesInfo</span>{<span class="w">FileSize</span>}[<span class="i">$Index</span>] = <span class="i">FileSize</span><span class="s">(</span><span class="i">$FingerprintsFile</span><span class="s">)</span><span class="sc">;</span> 407 <span class="s">(</span><span class="i">$ModifiedTimeString</span><span class="cm">,</span> <span class="i">$ModifiedDateString</span><span class="s">)</span> = <span class="i">FormattedFileModificationTimeAndDate</span><span class="s">(</span><span class="i">$FingerprintsFile</span><span class="s">)</span><span class="sc">;</span> 408 <span class="i">$FingerprintsFilesInfo</span>{<span class="w">FileLastModified</span>}[<span class="i">$Index</span>] = <span class="q">"$ModifiedTimeString; $ModifiedDateString"</span><span class="sc">;</span> 409 410 <span class="i">$FingerprintsFilesInfo</span>{<span class="w">InDelim</span>}[<span class="i">$Index</span>] = <span class="i">$InDelim</span><span class="sc">;</span> 411 412 <span class="i">%</span>{<span class="i">$FingerprintsFilesInfo</span>{<span class="w">FingerprintsFileIOParameters</span>}[<span class="i">$Index</span>]} = <span class="i">%FingerprintsFileIOParameters</span><span class="sc">;</span> 413 <span class="s">}</span> 414 <span class="s">}</span> 415 416 <span class="c"># Process option values...</span> <a name="ProcessOptions-"></a> 417 <span class="k">sub </span><span class="m">ProcessOptions</span> <span class="s">{</span> 418 <span class="i">%OptionsInfo</span> = <span class="s">(</span><span class="s">)</span><span class="sc">;</span> 419 420 <span class="i">$OptionsInfo</span>{<span class="w">ListAverageBitDensity</span>} = <span class="s">(</span><span class="i">$Options</span>{<span class="w">all</span>} || <span class="i">$Options</span>{<span class="w">averagebitdensity</span>}<span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span><span class="n">0</span><span class="sc">;</span> 421 <span class="i">$OptionsInfo</span>{<span class="w">ListBitDensity</span>} = <span class="s">(</span><span class="i">$Options</span>{<span class="w">all</span>} || <span class="i">$Options</span>{<span class="w">bitdensity</span>}<span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span><span class="n">0</span><span class="sc">;</span> 422 423 <span class="k">if</span> <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListAverageBitDensity</span>}<span class="s">)</span> <span class="s">{</span> 424 <span class="c"># List bit density as well...</span> 425 <span class="i">$OptionsInfo</span>{<span class="w">ListBitDensity</span>} = <span class="n">1</span><span class="sc">;</span> 426 <span class="s">}</span> 427 428 <span class="c"># By default, count number of rows containing fingerprints data...</span> 429 <span class="i">$OptionsInfo</span>{<span class="w">CountFingerprints</span>} = <span class="n">1</span><span class="sc">;</span> 430 <span class="i">$OptionsInfo</span>{<span class="w">CountEmptyFingerprints</span>} = <span class="s">(</span><span class="i">$Options</span>{<span class="w">all</span>} || <span class="i">$Options</span>{<span class="w">empty</span>}<span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span><span class="n">0</span><span class="sc">;</span> 431 432 <span class="i">$OptionsInfo</span>{<span class="w">ColMode</span>} = <span class="i">$Options</span>{<span class="w">colmode</span>}<span class="sc">;</span> 433 <span class="k">if</span> <span class="s">(</span><span class="i">IsNotEmpty</span><span class="s">(</span><span class="i">$Options</span>{<span class="w">fingerprintscol</span>}<span class="s">)</span><span class="s">)</span> <span class="s">{</span> 434 <span class="k">if</span> <span class="s">(</span><span class="i">$Options</span>{<span class="w">colmode</span>} =~ <span class="q">/^ColNum$/i</span><span class="s">)</span> <span class="s">{</span> 435 <span class="k">if</span> <span class="s">(</span>!<span class="i">IsPositiveInteger</span><span class="s">(</span><span class="i">$Options</span>{<span class="w">fingerprintscol</span>}<span class="s">)</span><span class="s">)</span> <span class="s">{</span> 436 <span class="k">die</span> <span class="q">"Error: Column value, $Options{fingerprintscol}, specified using \"--FingerprintsCol\" is not valid: Allowed integer values: > 0.\n"</span><span class="sc">;</span> 437 <span class="s">}</span> 438 <span class="s">}</span> 439 <span class="i">$OptionsInfo</span>{<span class="w">FingerprintsCol</span>} = <span class="i">$Options</span>{<span class="w">fingerprintscol</span>}<span class="sc">;</span> 440 <span class="s">}</span> 441 <span class="k">else</span> <span class="s">{</span> 442 <span class="i">$OptionsInfo</span>{<span class="w">FingerprintsCol</span>} = <span class="q">'AutoDetect'</span><span class="sc">;</span> 443 <span class="s">}</span> 444 445 <span class="k">if</span> <span class="s">(</span><span class="i">IsNotEmpty</span><span class="s">(</span><span class="i">$Options</span>{<span class="w">fingerprintsfield</span>}<span class="s">)</span><span class="s">)</span> <span class="s">{</span> 446 <span class="i">$OptionsInfo</span>{<span class="w">FingerprintsFieldLabel</span>} = <span class="i">$Options</span>{<span class="w">fingerprintsfield</span>}<span class="sc">;</span> 447 <span class="s">}</span> 448 <span class="k">else</span> <span class="s">{</span> 449 <span class="i">$OptionsInfo</span>{<span class="w">FingerprintsFieldLabel</span>} = <span class="q">'AutoDetect'</span><span class="sc">;</span> 450 <span class="s">}</span> 451 452 <span class="i">$OptionsInfo</span>{<span class="w">ValidateData</span>} = <span class="s">(</span><span class="i">$Options</span>{<span class="w">all</span>} || <span class="i">$Options</span>{<span class="w">datacheck</span>}<span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span><span class="n">0</span><span class="sc">;</span> 453 <span class="i">$OptionsInfo</span>{<span class="w">DetailLevel</span>} = <span class="i">$Options</span>{<span class="w">detail</span>}<span class="sc">;</span> 454 455 <span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsType</span>} = <span class="s">(</span><span class="i">$Options</span>{<span class="w">all</span>} || <span class="i">$Options</span>{<span class="w">fingerprintstype</span>}<span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span><span class="n">0</span><span class="sc">;</span> 456 <span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsDescription</span>} = <span class="s">(</span><span class="i">$Options</span>{<span class="w">all</span>} || <span class="i">$Options</span>{<span class="w">fingerprintsdescription</span>}<span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span><span class="n">0</span><span class="sc">;</span> 457 <span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsSize</span>} = <span class="s">(</span><span class="i">$Options</span>{<span class="w">all</span>} || <span class="i">$Options</span>{<span class="w">fingerprintssize</span>}<span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span><span class="n">0</span><span class="sc">;</span> 458 459 <span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsBitStringFormat</span>} = <span class="s">(</span><span class="i">$Options</span>{<span class="w">all</span>} || <span class="i">$Options</span>{<span class="w">fingerprintsbitstringformat</span>}<span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span><span class="n">0</span><span class="sc">;</span> 460 <span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsBitOrder</span>} = <span class="s">(</span><span class="i">$Options</span>{<span class="w">all</span>} || <span class="i">$Options</span>{<span class="w">fingerprintsbitorder</span>}<span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span><span class="n">0</span><span class="sc">;</span> 461 462 <span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsVectorValuesType</span>} = <span class="s">(</span><span class="i">$Options</span>{<span class="w">all</span>} || <span class="i">$Options</span>{<span class="w">fingerprintsvectorvaluestype</span>}<span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span><span class="n">0</span><span class="sc">;</span> 463 <span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsVectorValuesFormat</span>} = <span class="s">(</span><span class="i">$Options</span>{<span class="w">all</span>} || <span class="i">$Options</span>{<span class="w">fingerprintsvectorvaluesformat</span>}<span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span><span class="n">0</span><span class="sc">;</span> 464 465 <span class="i">$OptionsInfo</span>{<span class="w">InDelim</span>} = <span class="i">$Options</span>{<span class="w">indelim</span>}<span class="sc">;</span> 466 467 <span class="i">$OptionsInfo</span>{<span class="w">ListNumOfOnBits</span>} = <span class="s">(</span><span class="i">$Options</span>{<span class="w">all</span>} || <span class="i">$Options</span>{<span class="w">numofonbits</span>}<span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span><span class="n">0</span><span class="sc">;</span> 468 <span class="i">$OptionsInfo</span>{<span class="w">ListNumOfNonZeroValues</span>} = <span class="s">(</span><span class="i">$Options</span>{<span class="w">all</span>} || <span class="i">$Options</span>{<span class="w">numofnonzerovalues</span>}<span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span><span class="n">0</span><span class="sc">;</span> 469 470 <span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsDataEntryInfo</span>} = <span class="s">(</span><span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsType</span>} || <span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsDescription</span>} || <span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsSize</span>} || <span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsBitStringFormat</span>} || <span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsBitOrder</span>} || <span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsVectorValuesType</span>} || <span class="i">$OptionsInfo</span>{<span class="w">ListFingerprintsVectorValuesFormat</span>} || <span class="i">$OptionsInfo</span>{<span class="w">ListBitDensity</span>} || <span class="i">$OptionsInfo</span>{<span class="w">ListAverageBitDensity</span>} || <span class="i">$OptionsInfo</span>{<span class="w">ListNumOfOnBits</span>} || <span class="i">$OptionsInfo</span>{<span class="w">ListNumOfNonZeroValues</span>}<span class="s">)</span> ? <span class="n">1</span> <span class="co">:</span> <span class="n">0</span><span class="sc">;</span> 471 472 <span class="s">}</span> 473 474 <span class="c"># Setup script usage and retrieve command line arguments specified using various options...</span> <a name="SetupScriptUsage-"></a> 475 <span class="k">sub </span><span class="m">SetupScriptUsage</span> <span class="s">{</span> 476 477 <span class="c"># Retrieve all the options...</span> 478 <span class="i">%Options</span> = <span class="s">(</span><span class="s">)</span><span class="sc">;</span> 479 480 <span class="i">$Options</span>{<span class="w">colmode</span>} = <span class="q">'colnum'</span><span class="sc">;</span> 481 <span class="i">$Options</span>{<span class="w">detail</span>} = <span class="n">1</span><span class="sc">;</span> 482 <span class="i">$Options</span>{<span class="w">indelim</span>} = <span class="q">'comma'</span><span class="sc">;</span> 483 484 <span class="k">if</span> <span class="s">(</span>!<span class="i">GetOptions</span><span class="s">(</span>\<span class="i">%Options</span><span class="cm">,</span> <span class="q">"all|a"</span><span class="cm">,</span> <span class="q">"averagebitdensity"</span><span class="cm">,</span> <span class="q">"bitdensity"</span><span class="cm">,</span> <span class="q">"count"</span><span class="cm">,</span> <span class="q">"colmode|c=s"</span><span class="cm">,</span> <span class="q">"detail|d=i"</span><span class="cm">,</span> <span class="q">"datacheck"</span><span class="cm">,</span> <span class="q">"empty|e"</span><span class="cm">,</span> <span class="q">"fingerprintsfield=s"</span><span class="cm">,</span> <span class="q">"fingerprintscol=s"</span><span class="cm">,</span> <span class="q">"fingerprintstype"</span><span class="cm">,</span> <span class="q">"fingerprintsdescription"</span><span class="cm">,</span> <span class="q">"fingerprintssize"</span><span class="cm">,</span> <span class="q">"fingerprintsbitstringformat"</span><span class="cm">,</span> <span class="q">"fingerprintsbitorder"</span><span class="cm">,</span> <span class="q">"fingerprintsvectorvaluestype"</span><span class="cm">,</span> <span class="q">"fingerprintsvectorvaluesformat"</span><span class="cm">,</span> <span class="q">"help|h"</span><span class="cm">,</span> <span class="q">"indelim=s"</span><span class="cm">,</span> <span class="q">"numofonbits"</span><span class="cm">,</span> <span class="q">"numofnonzerovalues"</span><span class="cm">,</span> <span class="q">"workingdir|w=s"</span><span class="s">)</span><span class="s">)</span> <span class="s">{</span> 485 <span class="k">die</span> <span class="q">"\nTo get a list of valid options and their values, use \"$ScriptName -h\" or\n\"perl -S $ScriptName -h\" command and try again...\n"</span><span class="sc">;</span> 486 <span class="s">}</span> 487 <span class="k">if</span> <span class="s">(</span><span class="i">$Options</span>{<span class="w">workingdir</span>}<span class="s">)</span> <span class="s">{</span> 488 <span class="k">if</span> <span class="s">(</span>! <span class="k">-d</span> <span class="i">$Options</span>{<span class="w">workingdir</span>}<span class="s">)</span> <span class="s">{</span> 489 <span class="k">die</span> <span class="q">"Error: The value specified, $Options{workingdir}, for option \"-w --workingdir\" is not a directory name.\n"</span><span class="sc">;</span> 490 <span class="s">}</span> 491 <span class="k">chdir</span> <span class="i">$Options</span>{<span class="w">workingdir</span>} <span class="k">or</span> <span class="k">die</span> <span class="q">"Error: Couldn't chdir $Options{workingdir}: $! \n"</span><span class="sc">;</span> 492 <span class="s">}</span> 493 <span class="k">if</span> <span class="s">(</span><span class="i">$Options</span>{<span class="w">colmode</span>} !~ <span class="q">/^(ColNum|ColLabel)$/i</span><span class="s">)</span> <span class="s">{</span> 494 <span class="k">die</span> <span class="q">"Error: The value specified, $Options{colmode}, for option \"-c, --ColMode\" is not valid. Allowed values: ColNum, or ColLabel\n"</span><span class="sc">;</span> 495 <span class="s">}</span> 496 <span class="k">if</span> <span class="s">(</span>!<span class="i">IsPositiveInteger</span><span class="s">(</span><span class="i">$Options</span>{<span class="w">detail</span>}<span class="s">)</span><span class="s">)</span> <span class="s">{</span> 497 <span class="k">die</span> <span class="q">"Error: The value specified, $Options{detail}, for option \"-d, --detail\" is not valid. Allowed values: > 0 \n"</span><span class="sc">;</span> 498 <span class="s">}</span> 499 <span class="k">if</span> <span class="s">(</span><span class="i">$Options</span>{<span class="w">indelim</span>} !~ <span class="q">/^(comma|semicolon)$/i</span><span class="s">)</span> <span class="s">{</span> 500 <span class="k">die</span> <span class="q">"Error: The value specified, $Options{indelim}, for option \"--InDelim\" is not valid. Allowed values: comma, or semicolon\n"</span><span class="sc">;</span> 501 <span class="s">}</span> 502 <span class="s">}</span> 503 <a name="EOF-"></a></pre> <p> </p> <br /> <center> <img src="../../../images/h2o2.png"> </center> </body> </html>