diff tool3V2.xml @ 0:9c0e0cc778f8 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool3V2.xml	Fri Jan 22 12:09:17 2016 -0500
@@ -0,0 +1,61 @@
+<tool id="dffedssfopp12sdf" name="Predict Activity">
+<description>
+ used to predict activity based on given model 
+</description>
+<!--command interpreter="bash">step3run.sh $file1 $model $output1  2>/dev/null </command-->
+<requirements>
+        <requirement type="set_environment">CARET_TOOL3_PATH</requirement>
+                 <requirement type="set_environment">R_ROOT_DIR</requirement>
+    <requirement type="package" version="3.2.0">R</requirement>
+    <requirement type="package" version="1.0.0">caret-tools</requirement>
+</requirements>
+<command interpreter="Rscript">Preold_advance.R  $file1 $model $output1  2>/dev/null </command>
+
+<inputs>
+<param name="model" type="data" label="Select Model" help="Select built model obtained from caret tool 'Create script from the template file'." />
+<param name="file1" format="csv" type="data" label="Select file have descriptor data for activity prediction" help="csv format" />
+</inputs>
+<outputs>
+<data format="txt" name="output1" label="Prediction on $file1.name" />
+</outputs>
+<help>
+
+.. class:: infomark
+
+Make sure this file **must** contain **all** or **more features** than **input** "csv file" used for **model building**
+
+----------
+
+**Input "csv file" must be as follows**
+
+----------
+
+
+Example file:-
+
+
+
+# example.csv
+
+	 feature1,feature2,feature3,..,featureN
+
+ro1	234,2.3,34,7,..,0.9
+
+ro2	432,3.4,23.1,12,..,0.12
+
+ro3	692,23,12.2,19,..,0.14
+
+
+-----------
+
+**MODEL**
+
+Choose model file received from model building step.
+
+Model file has "data" file format can be seen by 
+
+clicking on output files shown in history . 
+
+
+</help>
+</tool>