comparison tool1V2.xml @ 4:dd73689fadf2 draft

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4:dd73689fadf2

<tool id="AdsmkdqaddodfdalV2" name="Prepare input file">
<description>
This Tool Converts Input csv File into RData Which Is Further Used for Model Building
 </description>
 <!--command interpreter="bash">step1.sh $file1 $output1 </command-->
 <requirements>
       <requirement type="set_environment">CARET_TOOL1_PATH</requirement>
     <requirement type="set_environment">R_ROOT_DIR</requirement>
    <requirement type="package" version="3.2.0">R</requirement>
    </requirements>
 <command interpreter="Rscript">csv2rdatatrain.R $file1 $RData </command>
 <inputs>
 <param format="csv" name="file1" type="data" label="Select file containing training data" help="CSV format" />
 </inputs>
 <outputs>
 <data type="data" format="RData" name="RData" label="Input.RData" />
 </outputs>
<help>
.. class:: infomark

**Input "csv file" format must be as given below :**


"",feature1,feaure2,feature3,..,activity


cpd1,623,0.4,3.4,..,Active
                      
cpd2,234,0.9,5.6,..,Inactive 

cpd3,567,0.5,3.14,..,Active

cpd4,231,0.1,1.2,..,Inactive 

here "cpd" stands for name or id of a compound. It is rowname with no column header.     


</help>
</tool>