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6
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1 <tool id="AdsmkdqaddodfdalV2" name="Prepare input file">
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2 <description>
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3 This Tool Converts Input csv File into RData Which Is Further Used for Model Building
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4 </description>
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5 <!--command interpreter="bash">step1.sh $file1 $output1 </command-->
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6 <requirements>
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7 <requirement type="set_environment">CARET_TOOL1_PATH</requirement>
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8 <requirement type="set_environment">R_ROOT_DIR</requirement>
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9 <requirement type="package" version="3.2.0">R</requirement>
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10 </requirements>
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11 <command interpreter="Rscript">csv2rdatatrain.R $file1 $RData </command>
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12 <inputs>
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13 <param format="csv" name="file1" type="data" label="Select file containing training data" help="CSV format" />
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14 </inputs>
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15 <outputs>
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16 <data type="data" name="RData" label="Input.RData" />
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17 </outputs>
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18 <help>
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19 .. class:: infomark
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20
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21 **Input "csv file" format must be as given below :**
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22
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23
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24 "",feature1,feaure2,feature3,..,activity
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25
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26
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27 cpd1,623,0.4,3.4,..,Active
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28
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29 cpd2,234,0.9,5.6,..,Inactive
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30
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31 cpd3,567,0.5,3.14,..,Active
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32
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33 cpd4,231,0.1,1.2,..,Inactive
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34
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35 here "cpd" stands for name or id of a compound. It is rowname with no column header.
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36
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37
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38 </help>
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39 </tool>
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