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<tool id="tool3AAA" name="Predict Activity using regression model">
<description>
 used to predict activity based on given regression model 
</description>
<!--command interpreter="bash">step3run.sh $file1 $model $output1  2>/dev/null </command-->
<requirements>
        <requirement type="set_environment">CARET_TOOL3_PATH</requirement>
                 <requirement type="set_environment">R_ROOT_DIR</requirement>
    <requirement type="package" version="3.2.0">R</requirement>
    <requirement type="package" version="1.0.0">caret-tools</requirement>
</requirements>
<command interpreter="Rscript">predict.R  $file1 $model $output1  2>/dev/null </command>

<inputs>
<param name="model"  format="data" type="data" label="Select Model" help="Select built model obtained from caret tool 'Create script from the template file for regression'." />
<param name="file1" format="csv" type="data" label="Select file have descriptor data for activity prediction" help="csv format" />
</inputs>
<outputs>
<data format="txt" name="output1" label="Prediction on $file1.name" />
</outputs>
<help>

.. class:: infomark

Make sure this file **must** contain **all** or **more features** than **input** "csv file" used for **model building**

----------

**Input "csv file" must be as follows**

----------


Example file:-



# example.csv

	 feature1,feature2,feature3,..,featureN

ro1	234,2.3,34,7,..,0.9

ro2	432,3.4,23.1,12,..,0.12

ro3	692,23,12.2,19,..,0.14


-----------

**MODEL**

Choose model file received from model building step.

Model file has "data" file format can be seen by 

clicking on output files shown in history . 


</help>
</tool>