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1 <tool id="tool3AAA" name="Predict Activity using regression model">
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2 <description>
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3 used to predict activity based on given regression model
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4 </description>
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5 <!--command interpreter="bash">step3run.sh $file1 $model $output1 2>/dev/null </command-->
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6 <requirements>
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7 <requirement type="set_environment">CARET_TOOL3_PATH</requirement>
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8 <requirement type="set_environment">R_ROOT_DIR</requirement>
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9 <requirement type="package" version="3.2.0">R</requirement>
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10 <requirement type="package" version="1.0.0">caret-tools</requirement>
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11 </requirements>
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12 <command interpreter="Rscript">predict.R $file1 $model $output1 2>/dev/null </command>
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13
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14 <inputs>
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15 <param name="model" format="data" type="data" label="Select Model" help="Select built model obtained from caret tool 'Create script from the template file for regression'." />
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16 <param name="file1" format="csv" type="data" label="Select file have descriptor data for activity prediction" help="csv format" />
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17 </inputs>
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18 <outputs>
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19 <data format="txt" name="output1" label="Prediction on $file1.name" />
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20 </outputs>
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21 <help>
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22
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23 .. class:: infomark
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24
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25 Make sure this file **must** contain **all** or **more features** than **input** "csv file" used for **model building**
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26
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27 ----------
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28
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29 **Input "csv file" must be as follows**
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30
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31 ----------
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32
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33
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34 Example file:-
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35
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36
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37
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38 # example.csv
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39
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40 feature1,feature2,feature3,..,featureN
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41
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42 ro1 234,2.3,34,7,..,0.9
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43
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44 ro2 432,3.4,23.1,12,..,0.12
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45
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46 ro3 692,23,12.2,19,..,0.14
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47
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48
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49 -----------
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50
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51 **MODEL**
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52
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53 Choose model file received from model building step.
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54
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55 Model file has "data" file format can be seen by
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56
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57 clicking on output files shown in history .
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58
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59
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60 </help>
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61 </tool>
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