Mercurial > repos > dchristiany > frogs_data_manager
changeset 4:95d5191f1dc4 draft
planemo upload commit c3ff1475af0e964a0c61458b66e2744c903d8d3d-dirty
| author | dchristiany |
|---|---|
| date | Thu, 03 Oct 2019 03:15:17 -0400 |
| parents | 33553ca873df |
| children | ac4fb9d97a51 |
| files | data_manager/FROGS_data_manager.py data_manager/FROGS_data_manager.xml data_manager_conf.xml |
| diffstat | 3 files changed, 6 insertions(+), 3 deletions(-) [+] |
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--- a/data_manager/FROGS_data_manager.py Wed Oct 02 11:33:30 2019 -0400 +++ b/data_manager/FROGS_data_manager.py Thu Oct 03 03:15:17 2019 -0400 @@ -26,7 +26,7 @@ db_index = download.content.splitlines() db_index = [line.split("\t") for line in db_index[1:]] db_index = [line[:4]+[line[1]+"_"+line[2]+"_"+line[1]]+[line[4]] for line in db_index] #add column name - + #get frogs dbs dir_name="frogs_db_"+time.strftime("%Y%m%d") os.mkdir(dir_name)
--- a/data_manager/FROGS_data_manager.xml Wed Oct 02 11:33:30 2019 -0400 +++ b/data_manager/FROGS_data_manager.xml Thu Oct 03 03:15:17 2019 -0400 @@ -1,6 +1,9 @@ -<tool id="f_data_manager" name="FROGS Data manager" version="2019.10.02" tool_type="manage_data"> +<tool id="FROGS_data_manager" name="FROGS Data manager" version="2019.10.02.2" tool_type="manage_data"> <requirements> </requirements> + <stdio> + <exit_code range="1:" /> + </stdio> <command detect_errors="exit_code"><![CDATA[ python $__tool_directory__/FROGS_data_manager.py --database="$database.database"
--- a/data_manager_conf.xml Wed Oct 02 11:33:30 2019 -0400 +++ b/data_manager_conf.xml Thu Oct 03 03:15:17 2019 -0400 @@ -1,6 +1,6 @@ <?xml version="1.0"?> <data_managers> - <data_manager tool_file="data_manager/data_manager.xml" id="f_data_manager"> + <data_manager tool_file="data_manager/FROGS_data_manager.xml" id="frogs_data_manager"> <data_table name="frogs_db"> <output> <column name="value"/>