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view data_manager_conf.xml @ 1:5d72aa36e997 draft

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planemo upload commit c3ff1475af0e964a0c61458b66e2744c903d8d3d-dirty
author dchristiany
date Wed, 02 Oct 2019 11:03:50 -0400
parents 7caea40b2a30
children 13f4cbb20c31
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<?xml version="1.0"?>
<data_managers>
    <data_manager tool_file="data_manager/data_manager.xml" id="frogs_data_manager">
        <data_table name="frogs_db">
            <output>
                <column name="value"/>
                <column name="name" />
                <column name="path" output_ref="output" >
                    <move type="directory">
                        <source>#echo "/".join(str(${path}).split('/')[:-1])#</source>
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">frogs_db</target>
                    </move>
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/frogs_db/#echo "/".join(str(${path}).split('/')[-2:])#</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
        <data_table name="HVL_db">
            <output>
                <column name="value"/>
                <column name="name" />
                <column name="path" output_ref="output" >
                    <move type="file">
                        <!--source>${path}/${value}.tsv</source-->
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">HVL_db</target>
                    </move>
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/HVL_db/${value}.fasta</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
        <data_table name="phiX_db">
            <output>
                <column name="value"/>
                <column name="name" />
                <column name="path" output_ref="output" >
                    <move type="file">
                        <!--source>${path}/${value}.tsv</source-->
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">phiX_db</target>
                    </move>
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/phiX_db/${value}.fasta</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
    </data_manager>
</data_managers>