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annotate tool-data/HVL_db.loc.sample @ 8:cac51639c40f draft

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author dchristiany
date Mon, 07 Oct 2019 04:55:50 -0400
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1 # Copyright (C) 2014 INRA
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2 #
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3 # This program is free software: you can redistribute it and/or modify
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4 # it under the terms of the GNU General Public License as published by
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5 # the Free Software Foundation, either version 3 of the License, or
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6 # (at your option) any later version.
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7 #
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8 # This program is distributed in the hope that it will be useful,
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9 # but WITHOUT ANY WARRANTY; without even the implied warranty of
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10 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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11 # GNU General Public License for more details.
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12 #
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13 # You should have received a copy of the GNU General Public License
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14 # along with this program. If not, see <http://www.gnu.org/licenses/>.
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15 #
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16 #
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17 #This is a sample file that enables tools FROGS_affiliations_postprocess to solve
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18 #inclusive amplicon sequence by selecting the smallest reference among multihit
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19 #You will need to create or download exact amplicon sequence reference fasta file
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20 #download link : http://genoweb.toulouse.inra.fr/frogs_databanks/HVL_reference
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21 #Finally you will need to create HVL_db.loc file similar to this one in your galaxy
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22 #tool-data directory.The HVL_db.loc file has this format (longer white space characters are
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23 #TAB characters):
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24 #
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25 #<unique_database_name> <name> <file_path>
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26 #
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27 #First column will be the visible name in galaxy.
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28 #So, for example, if you have UNITE 7.1 ITS1 (only!) stored
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29 #in /galaxy_databanks/ITS/UNITE_7.1/UNITE_ITS1.fasta
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30 #then the HVL_db.loc entry would look like this:
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31 #
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32 #
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33 # EXAMPLE FOR TEST :
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34 #Unite_extract_ITS1_test Unite_extract_ITS1_test ${__HERE__}/HVL_db_data/Unite_extract_ITS1.fasta