Mercurial > repos > dchristiany > data_manager_proteore
changeset 32:76924e57a230 draft
planemo upload commit c89c5deac442c0c2aa52b24f2c5af4b290773fc0-dirty
author | dchristiany |
---|---|
date | Mon, 28 Jan 2019 08:34:02 -0500 |
parents | e248f8f532a7 |
children | cdeffb3670c3 |
files | data_manager/resource_building.py data_manager/resource_building.xml |
diffstat | 2 files changed, 20 insertions(+), 20 deletions(-) [+] |
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--- a/data_manager/resource_building.py Mon Jan 28 08:20:58 2019 -0500 +++ b/data_manager/resource_building.py Mon Jan 28 08:34:02 2019 -0500 @@ -63,7 +63,7 @@ # Define organism_id (here Human) - to be upraded when other organism added to the project organism_id = "2" # Extract sample_category_id and output filename - tissue=tissue.split(".") + tissue=tissue.split("-") sample_category_id = tissue[0] name = tissue[1] output_file = name+"_"+time.strftime("%d-%m-%Y") + ".tsv"
--- a/data_manager/resource_building.xml Mon Jan 28 08:20:58 2019 -0500 +++ b/data_manager/resource_building.xml Mon Jan 28 08:34:02 2019 -0500 @@ -1,4 +1,4 @@ -<tool id="data_manager_proteore" name="Get source files for proteore tools" version="2019.01.25.2" tool_type="manage_data"> +<tool id="data_manager_proteore" name="Get source files for proteore tools" version="2019.01.25.3" tool_type="manage_data"> <description> to create or update reference files for proteore tools </description> @@ -41,24 +41,24 @@ </when> <when value="peptide_atlas"> <param name="tissues" type="select" multiple="false" label="Please select the tissue"> - <option value="432.Human_Adrenal_gland">Human Adrenal gland proteome</option> - <option value="441.Human_Brain">Human Brain proteome</option> - <option value="427.Human_Breast">Human Breast proteome</option> - <option value="434.Human_CSF">Human CSF (Cerebro Spinal Fluid) proteome</option> - <option value="374.Human_Colon_cancer">Human Colon cancer proteome</option> - <option value="429.Human_Digestive_system">Human Digestive system proteome</option> - <option value="430.Human_Female_reproductive_system">Human Female reproductive system proteome></option> - <option value="418.Human_Heart">Human Heart proteome</option> - <option value="424.Human_Kidney">Human Kidney proteome</option> - <option value="425.Human_Liver">Human Liver proteome</option> - <option value="419.Human_Lung">Human Lung proteome</option> - <option value="431.Human_Male_reproductive_system">Human Male reproductive system proteome</option> - <option value="420.Human_Pancreas">Human Pancreas proteome</option> - <option value="465.Human_Plasma_non_glyco">Human Plasma non glyco proteome</option> - <option value="421.Human_Spleen">Human Spleen proteome</option> - <option value="463.Human_Testis">Human Testis proteome</option> - <option value="422.Human_Urinary_bladder">Human Bladder proteome</option> - <option value="423.Human_Urine">Human Urine proteome</option> + <option value="432-Human_Adrenal_gland">Human Adrenal gland proteome</option> + <option value="441-Human_Brain">Human Brain proteome</option> + <option value="427-Human_Breast">Human Breast proteome</option> + <option value="434-Human_CSF">Human CSF (Cerebro Spinal Fluid) proteome</option> + <option value="374-Human_Colon_cancer">Human Colon cancer proteome</option> + <option value="429-Human_Digestive_system">Human Digestive system proteome</option> + <option value="430-Human_Female_reproductive_system">Human Female reproductive system proteome</option> + <option value="418-Human_Heart">Human Heart proteome</option> + <option value="424-Human_Kidney">Human Kidney proteome</option> + <option value="425-Human_Liver">Human Liver proteome</option> + <option value="419-Human_Lung">Human Lung proteome</option> + <option value="431-Human_Male_reproductive_system">Human Male reproductive system proteome</option> + <option value="420-Human_Pancreas">Human Pancreas proteome</option> + <option value="465-Human_Plasma_non_glyco">Human Plasma non glyco proteome</option> + <option value="421-Human_Spleen">Human Spleen proteome</option> + <option value="463-Human_Testis">Human Testis proteome</option> + <option value="422-Human_Urinary_bladder">Human Bladder proteome</option> + <option value="423-Human_Urine">Human Urine proteome</option> </param> </when> <when value="id_mapping">