Mercurial > repos > dchristiany > data_manager_proteore

view data_manager_conf.xml @ 9:6c47b77d89d6 draft

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planemo upload commit e4655be6b7c845dd213cc88058ae7bf56c5ca360-dirty
author dchristiany
date Fri, 19 Oct 2018 05:42:11 -0400
parents 1c5a49b120b6
children 2f153b41b6fe
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<?xml version="1.0"?>
<data_managers>
    <data_manager tool_file="data_manager/resource_building.xml" id="resource_building">
        <data_table name="protein_atlas">
            <output>
                <column name="value" />
                <column name="name" />
                <column name="path" output_ref="output" >
                    <move type="file">
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">protein_atlas/${path}</target>
                    </move>
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/protein_atlas/${path}</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
        <data_table name="peptide_atlas">
            <output>
                <column name="tissue" />
                <column name="name" />
                <column name="value" output_ref="output" >
                    <move type="file">
                        <!--source>${path}/${value}.tsv</source-->
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">peptide_atlas/</target>
                    </move>
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/peptide_atlas/${tissue}.tsv</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
        <data_table name="id_mapping">
            <output>
                <column name="value" />
                <column name="name" />
                <column name="path" output_ref="output" >
                    <move type="file">
                        <!--source>${path}</source-->
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">id_mapping/</target>
                    </move>
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/id_mapping/${value}.tsv</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
    </data_manager>
</data_managers>