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planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
author dchristiany
date Thu, 18 Oct 2018 12:16:09 -0400
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children c60497a290e8
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<?xml version="1.0"?>
<data_managers>
    <data_manager tool_file="data_manager/resource_building.xml" id="data_manager_proteore">
        <data_table name="proteinatlas">
            <output>
                <column name="value" />
                <column name="name" />
                <column name="path" output_ref="output" >
                    <move type="file">
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">proteinatlas/${path}</target>
                    </move>
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/proteinatlas/${path}</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
        <data_table name="peptide_atlas">
            <output>
                <column name="tissue" />
                <column name="name" />
                <column name="value" output_ref="output" >
                    <move type="file">
                        <!--source>${path}/${value}.tsv</source-->
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">peptide_atlas/</target>
                    </move>
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/peptide_atlas/${tissue}.tsv</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
        <data_table name="id_mapping_tab">
            <output>
                <column name="value" />
                <column name="name" />
                <column name="path" output_ref="output" >
                    <move type="file">
                        <!--source>${path}</source-->
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">id_mapping/</target>
                    </move>
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/id_mapping/${value}.tsv</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
    </data_manager>
</data_managers>