Mercurial > repos > dchristiany > data_manager_proteore

comparison data_manager/resource_building.py @ 51:8f6ddad93e9f draft

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planemo upload commit 12b0b3e18cd7af9a8588906fa2ec199b9d2a770f-dirty
author dchristiany
date Fri, 01 Mar 2019 09:37:07 -0500
parents 4b6c6f9b4de0
children
comparison
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50:932950befe87 51:8f6ddad93e9f
50 path = os.path.join(target_directory, output_file) 50 path = os.path.join(target_directory, output_file)
51 unzip(url, path) #download and save file 51 unzip(url, path) #download and save file
52 tissue_name = tissue_name + " " + time.strftime("%d/%m/%Y") 52 tissue_name = tissue_name + " " + time.strftime("%d/%m/%Y")
53 tissue_id = tissue_name.replace(" ","_").replace("/","-") 53 tissue_id = tissue_name.replace(" ","_").replace("/","-")
54 54
55 data_table_entry = dict(id=tissue_id, name = tissue_name, value = tissue, path = path) 55 data_table_entry = dict(id=tissue_id, name = tissue_name, tissue = tissue, value = path)
56 _add_data_table_entry(data_manager_dict, data_table_entry, "proteore_protein_atlas") 56 _add_data_table_entry(data_manager_dict, data_table_entry, "proteore_protein_atlas")
57 57
58 58
59 ####################################################################################################### 59 #######################################################################################################
60 # 2. Peptide Atlas 60 # 2. Peptide Atlas
474 id = species+"_"+interactome+"_"+ time.strftime("%d-%m-%Y") 474 id = species+"_"+interactome+"_"+ time.strftime("%d-%m-%Y")
475 475
476 with open(path, 'w') as handle: 476 with open(path, 'w') as handle:
477 json.dump(dico, handle, sort_keys=True) 477 json.dump(dico, handle, sort_keys=True)
478 478
479 data_table_entry = dict(id=id, name = name, value = species, path = path) 479 data_table_entry = dict(id=id, name = name, species = species, value = path)
480 _add_data_table_entry(data_manager_dict, data_table_entry, "proteore_"+interactome+"_dictionaries") 480 _add_data_table_entry(data_manager_dict, data_table_entry, "proteore_"+interactome+"_dictionaries")
481 481
482 482
483 ####################################################################################################### 483 #######################################################################################################
484 # Main function 484 # Main function