view igblastmerge.xml @ 1:30bbd9fe953c draft

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<tool id="igblastmerge" name="IgBlastMerge" version="1.0">
	<description>Converting one or more "igBLASTreport parser" outputs for "VDJ Blast plot"</description>
	<command interpreter="python">
		igblastmerge.py 
		--input 
		#for $i, $f in enumerate($files)
			${f.file}
		#end for
		--id
		#for $i, $f in enumerate($files)
			$(f.id)
		#end for
		--output $out_file
	</command>
	<inputs>
		<repeat name="files" title="File" min="1" default="1">
			<param name="file" format="tabular" type="data" label="Data to Process" />
			<param name="id" type="text" label="ID" />
		</repeat>
	</inputs>
	<outputs>
		<data format="tabular" name="out_file" />
	</outputs>
	<help>
		Step 3 of the Immune Repertoire tools, merges the parsed reports generated in step 2 into one file with an Sample ID.
	</help>

</tool>