Mercurial > repos > davidvanzessen > complete_immunerepertoire_igg

view tool_dependencies.xml @ 1:778a9d130904 draft

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author davidvanzessen
date Thu, 04 Sep 2014 07:46:23 -0400
parents 7d97fa9a0423
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<?xml version="1.0"?>
<tool_dependency>
	<set_environment version="1.0">            
    </set_environment>
    
	<package name="igBlastn" version="1.0.0"> 
        <install version="1.0">
            <actions>
            	<action type="shell_command">wget ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.3.0/ncbi-igblast-1.0.0-x64-linux.tar.gz -P $INSTALL_DIR</action>
            	<action type="shell_command">tar zxvf $INSTALL_DIR/ncbi-igblast-1.0.0-x64-linux.tar.gz -C $INSTALL_DIR</action>
                <action type="set_environment">
                	<environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/ncbi-igblast-1.0.0/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
					Downloads the igblastn-1.0.0 executable from NCBI and uses a fixed database included in this tool.
        </readme>
    </package>
</tool_dependency>