Mercurial > repos > davidvanzessen > clonal_sequences_in_paired_samples

changeset 42:7d4eda663c29 draft

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Uploaded
author davidvanzessen
date Mon, 14 Sep 2015 10:56:05 -0400
parents f7c07faaa3e8
children 2eef2c438500
files RScript.r
diffstat 1 files changed, 3 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/RScript.r	Mon Sep 14 09:17:50 2015 -0400
+++ b/RScript.r	Mon Sep 14 10:56:05 2015 -0400
@@ -177,7 +177,9 @@
       
       merge.filter = first.merge == patient.fuzzy$merge
       
-      match.filter = merge.filter & grepl(first.clone.sequence, patient.fuzzy$Clone_Sequence)
+      length.filter = nchar(patient.fuzzy$Clone_Sequence) - nchar(first.clone.sequence) <= 9
+      
+      match.filter = merge.filter & grepl(first.clone.sequence, patient.fuzzy$Clone_Sequence) & length.filter
       
       if(sum(match.filter) == 2){
         second.match = which(match.filter)[2]