Mercurial > repos > davidvanzessen > baseline_bayesian_estimation
changeset 6:8a4183eed741 draft
Uploaded
| author | davidvanzessen |
|---|---|
| date | Mon, 18 Aug 2014 05:28:47 -0400 |
| parents | d8de51314d3f |
| children | 45a5e3bd9df4 |
| files | wrapper.sh |
| diffstat | 1 files changed, 9 insertions(+), 2 deletions(-) [+] |
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--- a/wrapper.sh Thu Aug 14 07:17:26 2014 -0400 +++ b/wrapper.sh Mon Aug 18 05:28:47 2014 -0400 @@ -47,8 +47,15 @@ summaryfile="$PWD/summary_${id}.txt" gappedfile="$PWD/gappednt_${id}.txt" filtered="$PWD/filtered_${id}.txt" - cat $PWD/$id/*/1_* > $summaryfile - cat $PWD/$id/*/2_* > $gappedfile + filecount=`ls -l $PWD/$id/ | wc -l` + if [ "$filecount" -eq "1" ] + then + cat $PWD/$id/*/1_* > $summaryfile + cat $PWD/$id/*/2_* > $gappedfile + else + cat $PWD/$id/1_* > $summaryfile + cat $PWD/$id/2_* > $gappedfile + fi Rscript $dir/filter.r $summaryfile $gappedfile "$selection" $filtered 2>&1 final="$PWD/final_${id}.txt"