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comparison wrapper.sh @ 11:e160483ee900 draft

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Uploaded
author davidvanzessen
date Thu, 25 Jun 2015 06:12:24 -0400
parents 525b58fc8622
children 2d08a1353145
comparison
equal deleted inserted replaced
10:82016fd934c8 11:e160483ee900
37 count=0 37 count=0
38 for current in ${inputs[@]} 38 for current in ${inputs[@]}
39 do 39 do
40 f=$(file $current) 40 f=$(file $current)
41 zipType="Zip archive" 41 zipType="Zip archive"
42 if [[ "$f" == *"$zipType"* ]] 42 if [[ "$f" == *"$zipType"* ]] || [[ "$f" == *"XZ compressed data"* ]]
43 then 43 then
44 id=${IDs[$count]} 44 id=${IDs[$count]}
45 echo "id=$id" 45 echo "id=$id"
46 unzip $current -d $PWD/$id/ >> $PWD/unziplog.log 46 if [[ "$f" == *"Zip archive"* ]] ; then
47 echo "Zip archive"
48 echo "unzip $input -d $PWD/files/"
49 unzip $current -d "$PWD/$id/"
50 elif [[ "$f" == *"XZ compressed data"* ]] ; then
51 echo "ZX archive"
52 echo "tar -xJf $input -C $PWD/files/"
53 mkdir -p "$PWD/$id/files"
54 tar -xJf $current -C "$PWD/$id/files/"
55 fi
47 summaryfile="$PWD/summary_${id}.txt" 56 summaryfile="$PWD/summary_${id}.txt"
48 gappedfile="$PWD/gappednt_${id}.txt" 57 gappedfile="$PWD/gappednt_${id}.txt"
49 filtered="$PWD/filtered_${id}.txt" 58 filtered="$PWD/filtered_${id}.txt"
50 filecount=`ls -l $PWD/$id/ | wc -l` 59 filecount=`ls -l $PWD/$id/ | wc -l`
51 if [[ "$filecount" -eq "2" ]] 60 if [[ "$filecount" -eq "2" ]]