Mercurial > repos > davidvanzessen > argalaxy_tools
changeset 49:188712b1735f draft
Uploaded
| author | davidvanzessen |
|---|---|
| date | Wed, 27 Jan 2016 10:41:38 -0500 |
| parents | d08dfc8d5225 |
| children | 2a79f9adf89b |
| files | complete_immunerepertoire.xml |
| diffstat | 1 files changed, 7 insertions(+), 2 deletions(-) [+] |
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--- a/complete_immunerepertoire.xml Wed Jan 27 10:36:35 2016 -0500 +++ b/complete_immunerepertoire.xml Wed Jan 27 10:41:38 2016 -0500 @@ -10,9 +10,9 @@ #end for " $out_file $out_file.files_path "$clonaltype" #if $gene_selection.source == "imgtdb" - "${gene_selection.species}" "${gene_selection.locus}" $filterproductive $clonality_method + "${gene_selection.species}" "${gene_selection.locus}" $filterproductive $clonality_method $filter_uniques #else - "custom" "${gene_selection.vgenes};${gene_selection.dgenes};${gene_selection.jgenes}" $filterproductive $clonality_method + "custom" "${gene_selection.vgenes};${gene_selection.dgenes};${gene_selection.jgenes}" $filterproductive $clonality_method $filter_uniques #end if </command> <inputs> @@ -107,6 +107,11 @@ <option value="old">Old</option> <option value="boyd">R Package</option> </param> + + <param name="filter_uniques" type="select" label="Filter unique sequences" help="Filter out the sequences (based on CDR1, FR2, CDR2, FR3 and CDR3) that only occur once."> + <option value="yes">Yes</option> + <option value="no">No</option> + </param> </inputs> <outputs>