Mercurial > repos > davidvanzessen > argalaxy_tools
changeset 20:0f6885b14628 draft
Uploaded
| author | davidvanzessen |
|---|---|
| date | Mon, 11 Jan 2016 05:50:54 -0500 |
| parents | 672d5e010b1f |
| children | 5e2312fd57b7 |
| files | complete_immunerepertoire.xml report_clonality_igg.xml tool_dependencies.xml |
| diffstat | 3 files changed, 8 insertions(+), 1 deletions(-) [+] |
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--- a/complete_immunerepertoire.xml Fri Dec 25 05:35:06 2015 -0500 +++ b/complete_immunerepertoire.xml Mon Jan 11 05:50:54 2016 -0500 @@ -114,6 +114,7 @@ </outputs> <requirements> <requirement type="package" version="0.6">igblastwrp</requirement> + <requirement type="package" version="3.3">weblogo</requirement> </requirements> <help> The entire Immune Repertoire pipeline as a single tool, input several FASTA files or IMGT zip/txz files, give them an ID and it will BLAST/parse, merge and plot them.
--- a/report_clonality_igg.xml Fri Dec 25 05:35:06 2015 -0500 +++ b/report_clonality_igg.xml Mon Jan 11 05:50:54 2016 -0500 @@ -99,6 +99,9 @@ <outputs> <data format="html" name="out_file" /> </outputs> + <requirements> + <requirement type="package" version="3.3">weblogo</requirement> + </requirements> <help> **INPUT**
--- a/tool_dependencies.xml Fri Dec 25 05:35:06 2015 -0500 +++ b/tool_dependencies.xml Mon Jan 11 05:50:54 2016 -0500 @@ -17,7 +17,7 @@ <destination>$INSTALL_DIR/</destination> </action> <action type="set_environment"> - <environment_variable name="IGBLASTWRP" action="set_to">$INSTALL_DIR/</environment_variable> + <environment_variable action="set_to" name="IGBLASTWRP">$INSTALL_DIR/</environment_variable> </action> </actions> </install> @@ -25,4 +25,7 @@ Downloads https://github.com/mikessh/higblast/ </readme> </package> + <package name="weblogo" version="3.3"> + <repository changeset_revision="18cb94906560" name="package_weblogo_3_3" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> </tool_dependency>