Mercurial > repos > davidvanzessen > argalaxy_tools

comparison report_clonality/r_wrapper.sh @ 41:85566b336a72 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author davidvanzessen
date Tue, 26 Jan 2016 03:01:48 -0500
parents a2fdcf1a2e50
children 65134a538c5a
comparison
equal deleted inserted replaced
40:a2fdcf1a2e50 41:85566b336a72
29 cp $dir/tabber.js $outputDir 29 cp $dir/tabber.js $outputDir
30 cp $dir/style.css $outputDir 30 cp $dir/style.css $outputDir
31 cp $dir/script.js $outputDir 31 cp $dir/script.js $outputDir
32 cp $dir/jquery-1.11.0.min.js $outputDir 32 cp $dir/jquery-1.11.0.min.js $outputDir
33 samples=`cat $outputDir/samples.txt` 33 samples=`cat $outputDir/samples.txt`
34 CIRCOSTOOLS="/home/galaxy/Downloads/circos-master/tools" 34 #CIRCOSTOOLS="/home/galaxy/Downloads/circos-master/tools"
35 echo "<html><center><h1><a href='index.html'>Click here for the results</a></h1>Tip: Open it in a new tab (middle mouse button or right mouse button -> 'open in new tab' on the link above)<br />" > $2 35 echo "<html><center><h1><a href='index.html'>Click here for the results</a></h1>Tip: Open it in a new tab (middle mouse button or right mouse button -> 'open in new tab' on the link above)<br />" > $2
36 echo "<table border = 1>" >> $2 36 echo "<table border = 1>" >> $2
37 echo "<thead><tr><th>Sample/Replicate</th><th>All</th><th>Productive</th><th>Unique Productive</th><th>Unproductive</th><th>Unique Unproductive</th></tr></thead>" >> $2 37 echo "<thead><tr><th>Sample/Replicate</th><th>All</th><th>Productive</th><th>Unique Productive</th><th>Unproductive</th><th>Unique Unproductive</th></tr></thead>" >> $2
38 while IFS=, read sample all productive perc_prod productive_unique perc_prod_un unproductive perc_unprod unproductive_unique perc_unprod_un 38 while IFS=, read sample all productive perc_prod productive_unique perc_prod_un unproductive perc_unprod unproductive_unique perc_unprod_un
39 do 39 do