Mercurial > repos > davidvanzessen > alakazam

changeset 7:4f46629224d6 draft

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Uploaded
author davidvanzessen
date Mon, 09 May 2016 07:00:58 -0400
parents e72666bfb8d3
children db7ff40afce7
files alakazam.r alakazam.sh alakazam.xml
diffstat 3 files changed, 12 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/alakazam.r	Mon May 09 07:00:58 2016 -0400
@@ -0,0 +1,6 @@
+library(alakazam)
+
+args <- commandArgs(trailingOnly = TRUE)
+
+input=args[1]
+output=args[2]
--- a/alakazam.sh	Mon May 09 06:06:56 2016 -0400
+++ b/alakazam.sh	Mon May 09 07:00:58 2016 -0400
@@ -1,4 +1,9 @@
 #!/bin/bash
 set -e
+
+dir="$(cd "$(dirname "$0")" && pwd)"
+
 input=$1
 output=$2
+
+Rscript $dir/alakazam.r $input $output
--- a/alakazam.xml	Mon May 09 06:06:56 2016 -0400
+++ b/alakazam.xml	Mon May 09 07:00:58 2016 -0400
@@ -11,7 +11,7 @@
 	</outputs>
 	<requirements>
 		<requirement type="package" version="0.2.3">alakazam</requirement>
-		<requirement type="package" version="3.2.1">package_r_3_2_1</requirement>
+		<!--<requirement type="package" version="3.2.1">package_r_3_2_1</requirement>-->
 	</requirements>
 	<help>