Mercurial > repos > davidvanzessen > alakazam
changeset 0:08fb96325369 draft
Uploaded
| author | davidvanzessen |
|---|---|
| date | Mon, 09 May 2016 05:11:54 -0400 |
| parents | |
| children | 49a564079b18 |
| files | alakazam.sh alakazam.xml tool_dependencies.xml |
| diffstat | 3 files changed, 48 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/alakazam.sh Mon May 09 05:11:54 2016 -0400 @@ -0,0 +1,4 @@ +#!/bin/bash +set -e +input=$1 +output=$2
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/alakazam.xml Mon May 09 05:11:54 2016 -0400 @@ -0,0 +1,19 @@ +<tool id="report_clonality_igg" name="Report Clonality" version="1.0"> + <description> </description> + <command interpreter="bash"> + alakazam.sh $in_file $out_file + </command> + <inputs> + <param name="in_file" format="tabular" type="data" label="Data to Process" /> + </inputs> + <outputs> + <data format="tabular" name="out_file" /> + </outputs> + <requirements> + <requirement type="package" version="3.3">alakazam</requirement> + <!--<requirement type="package" version="0.20">circostools</requirement>--> + </requirements> + <help> + + </help> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Mon May 09 05:11:54 2016 -0400 @@ -0,0 +1,25 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="package_r_3_2_1" version="1.0"> + <repository changeset_revision="9f31a291b305" name="package_r_3_2_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="alakazam" version="0.2.3"> + <install version="1.0"> + <actions> + <action type="setup_r_environment"> + <repository changeset_revision="9f31a291b305" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"> + <package name="R" version="3.2.1" /> + </repository> + <package> + https://bitbucket.org/kleinstein/alakazam/downloads/alakazam_0.2.3.tar.gz + </package> + </action> + </actions> + </install> + </package> + <!-- + <package name="circostools" version="0.20"> + <repository name="package_circostools_0_20" owner="iuc" /> + </package> + --> +</tool_dependency>