changeset 1:0dbd017cee75 draft

Deleted selected files

--- a/simple_tool.sh	Wed Jun 18 17:00:16 2014 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,8 +0,0 @@
-#!/bin/bash
-
-INPUT="$1"
-OUTPUT="$2"
-
-echo $INPUT > $OUTPUT
-exit 0
-

--- a/simple_tool.xml	Wed Jun 18 17:00:16 2014 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,43 +0,0 @@
-<?xml version="1.0"?>
-<tool id="simple_tool" name="Simple Tool" version="1.0.0">
-  <description>Simple Tool</description>
-  <requirements>
-     <requirement type="set_environment">SCRIPT_PATH</requirement>
-  </requirements>
-  <command interpreter="sh">simple_tool.sh '$filepath' $output</command>
-  <inputs>   
-    <param name="filepath" type="text" size="100" label="anything" value="/home/foo/blah">
-    </param>
-      
-  </inputs>
-  <outputs> 
-    <data format="txt" name="output" label="whatever" />
-  </outputs>
-  <help>
-
-.. class:: infomark
-
-**Copying files**
-
-This tool will allow you to upload a single file that is locally available on Helix or Biowulf.  There is no browse function,
-however, so you will need to give the full path name.  If you have permission to read the file, Galaxy can import the file.
-
-.. class:: warningmark
-
-**Important Notes**
-
-- The file path must be a file, not a directory
-- You must give the fullpath to the file (/home/user/myfile.txt, not ./myfile.txt)
-- You must have permission to read the file
-- Only /home or /data directories are allowed
-- The files must be on Helix or Biowulf!  Use 'Upload File' for all other files!
-
------
-
-**Example**
-
-- /home/user/bamfiles/abc123.bam
-- /data/anotheruser/data/good_data/very_good_data.txt
-
-  </help>
-</tool>

--- a/tool_dependencies.xml	Wed Jun 18 17:00:16 2014 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,13 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <package name="simple_tool" version="1.0.0">
-        <install version="1.0">
-            <actions>
-                <action type="set_environment">
-                    <environment_variable action="set_to" name="SCRIPT_PATH">$INSTALL_DIR/bin</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>whatever</readme>
-    </package>
-</tool_dependency>