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changeset 15:21a002327de5 draft

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Uploaded
author david-hoover
date Wed, 12 Sep 2012 18:00:59 -0400
parents 47437865774d
children bbf1cacc24f1
files README
diffstat 1 files changed, 12 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README	Wed Sep 12 18:00:59 2012 -0400
@@ -0,0 +1,12 @@
+The gatk2_sorted_picard_index.loc and gatk2_annotations.txt files must be
+copied into the tool-data directory.  The file tool_data_table_conf.xml must
+be edited to include references to these two new files.  
+
+Additionally, copies of or links to the GenomeAnalysisTK.jar and key file
+must be made within the directory tool-data/shared/jars/gatk2.
+
+  cd ${GALAXY_DATA_INDEX_DIR}/shared/jars
+  mkdir gatk2
+  cd gatk2
+  ln -s /path/to/wherever/GenomeAnalysisTK.jar .
+  ln -s /path/to/wherever/key.file gatk2_key_file