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changeset 31:1326b011a3b9 draft

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Uploaded
author david-hoover
date Thu, 20 Sep 2012 10:42:32 -0400
parents 4fa715d44c26
children 29507d31c174
files base_recalibrator.xml depth_of_coverage.xml indel_realigner.xml print_reads.xml realigner_target_creator.xml unified_genotyper.xml variant_annotator.xml variant_apply_recalibration.xml variant_combine.xml variant_eval.xml variant_filtration.xml variant_recalibrator.xml variant_select.xml variants_validate.xml
diffstat 14 files changed, 14 insertions(+), 14 deletions(-) [+]
line wrap: on
line diff
--- a/base_recalibrator.xml	Thu Sep 20 10:34:28 2012 -0400
+++ b/base_recalibrator.xml	Thu Sep 20 10:42:32 2012 -0400
@@ -1,4 +1,4 @@
-<tool id="gatk2_base_recalibrator" name="Base Recalibrator" version="0.0.1">
+<tool id="gatk2_base_recalibrator" name="Base Recalibrator" version="0.0.2">
   <description>on BAM files</description>
   <requirements>
       <requirement type="package" version="2.1">gatk</requirement>
--- a/depth_of_coverage.xml	Thu Sep 20 10:34:28 2012 -0400
+++ b/depth_of_coverage.xml	Thu Sep 20 10:42:32 2012 -0400
@@ -1,4 +1,4 @@
-<tool id="gatk2_depth_of_coverage" name="Depth of Coverage" version="0.0.1">
+<tool id="gatk2_depth_of_coverage" name="Depth of Coverage" version="0.0.2">
   <description>on BAM files</description>
   <requirements>
       <requirement type="package" version="2.1">gatk</requirement>
--- a/indel_realigner.xml	Thu Sep 20 10:34:28 2012 -0400
+++ b/indel_realigner.xml	Thu Sep 20 10:42:32 2012 -0400
@@ -1,4 +1,4 @@
-<tool id="gatk2_indel_realigner" name="Indel Realigner" version="0.0.1">
+<tool id="gatk2_indel_realigner" name="Indel Realigner" version="0.0.2">
   <description>- perform local realignment</description>
   <requirements>
       <requirement type="package" version="2.1">gatk</requirement>
--- a/print_reads.xml	Thu Sep 20 10:34:28 2012 -0400
+++ b/print_reads.xml	Thu Sep 20 10:42:32 2012 -0400
@@ -1,4 +1,4 @@
-<tool id="gatk2_print_reads" name="Print Reads" version="0.0.1">
+<tool id="gatk2_print_reads" name="Print Reads" version="0.0.2">
   <description>on BAM files</description>
   <requirements>
       <requirement type="package" version="2.1">gatk</requirement>
--- a/realigner_target_creator.xml	Thu Sep 20 10:34:28 2012 -0400
+++ b/realigner_target_creator.xml	Thu Sep 20 10:42:32 2012 -0400
@@ -1,4 +1,4 @@
-<tool id="gatk2_realigner_target_creator" name="Realigner Target Creator" version="0.0.1">
+<tool id="gatk2_realigner_target_creator" name="Realigner Target Creator" version="0.0.2">
   <description>for use in local realignment</description>
   <requirements>
       <requirement type="package" version="2.1">gatk</requirement>
--- a/unified_genotyper.xml	Thu Sep 20 10:34:28 2012 -0400
+++ b/unified_genotyper.xml	Thu Sep 20 10:42:32 2012 -0400
@@ -1,4 +1,4 @@
-<tool id="gatk2_unified_genotyper" name="Unified Genotyper" version="0.0.1">
+<tool id="gatk2_unified_genotyper" name="Unified Genotyper" version="0.0.2">
   <description>SNP and indel caller</description>
   <requirements>
       <requirement type="package" version="2.1">gatk</requirement>
--- a/variant_annotator.xml	Thu Sep 20 10:34:28 2012 -0400
+++ b/variant_annotator.xml	Thu Sep 20 10:42:32 2012 -0400
@@ -1,4 +1,4 @@
-<tool id="gatk2_variant_annotator" name="Variant Annotator" version="0.0.1">
+<tool id="gatk2_variant_annotator" name="Variant Annotator" version="0.0.2">
   <description></description>
   <requirements>
       <requirement type="package" version="2.1">gatk</requirement>
--- a/variant_apply_recalibration.xml	Thu Sep 20 10:34:28 2012 -0400
+++ b/variant_apply_recalibration.xml	Thu Sep 20 10:42:32 2012 -0400
@@ -1,4 +1,4 @@
-<tool id="gatk2_variant_apply_recalibration" name="Apply Variant Recalibration" version="0.0.1">
+<tool id="gatk2_variant_apply_recalibration" name="Apply Variant Recalibration" version="0.0.2">
   <description></description>
   <requirements>
       <requirement type="package" version="2.1">gatk</requirement>
--- a/variant_combine.xml	Thu Sep 20 10:34:28 2012 -0400
+++ b/variant_combine.xml	Thu Sep 20 10:42:32 2012 -0400
@@ -1,4 +1,4 @@
-<tool id="gatk2_variant_combine" name="Combine Variants" version="0.0.1">
+<tool id="gatk2_variant_combine" name="Combine Variants" version="0.0.2">
   <description></description>
   <requirements>
       <requirement type="package" version="2.1">gatk</requirement>
--- a/variant_eval.xml	Thu Sep 20 10:34:28 2012 -0400
+++ b/variant_eval.xml	Thu Sep 20 10:42:32 2012 -0400
@@ -1,4 +1,4 @@
-<tool id="gatk2_variant_eval" name="Eval Variants" version="0.0.1">
+<tool id="gatk2_variant_eval" name="Eval Variants" version="0.0.2">
   <description></description>
   <requirements>
       <requirement type="package" version="2.1">gatk</requirement>
--- a/variant_filtration.xml	Thu Sep 20 10:34:28 2012 -0400
+++ b/variant_filtration.xml	Thu Sep 20 10:42:32 2012 -0400
@@ -1,4 +1,4 @@
-<tool id="gatk2_variant_filtration" name="Variant Filtration" version="0.0.1">
+<tool id="gatk2_variant_filtration" name="Variant Filtration" version="0.0.2">
   <description>on VCF files</description>
   <requirements>
       <requirement type="package" version="2.1">gatk</requirement>
--- a/variant_recalibrator.xml	Thu Sep 20 10:34:28 2012 -0400
+++ b/variant_recalibrator.xml	Thu Sep 20 10:42:32 2012 -0400
@@ -1,4 +1,4 @@
-<tool id="gatk2_variant_recalibrator" name="Variant Recalibrator" version="0.0.1">
+<tool id="gatk2_variant_recalibrator" name="Variant Recalibrator" version="0.0.2">
   <description></description>
   <requirements>
       <requirement type="package" version="2.1">gatk</requirement>
--- a/variant_select.xml	Thu Sep 20 10:34:28 2012 -0400
+++ b/variant_select.xml	Thu Sep 20 10:42:32 2012 -0400
@@ -1,4 +1,4 @@
-<tool id="gatk2_variant_select" name="Select Variants" version="0.0.1">
+<tool id="gatk2_variant_select" name="Select Variants" version="0.0.2">
   <description>from VCF files</description>
   <requirements>
       <requirement type="package" version="2.1">gatk</requirement>
--- a/variants_validate.xml	Thu Sep 20 10:34:28 2012 -0400
+++ b/variants_validate.xml	Thu Sep 20 10:42:32 2012 -0400
@@ -1,4 +1,4 @@
-<tool id="gatk2_validate_variants" name="Validate Variants" version="0.0.1">
+<tool id="gatk2_validate_variants" name="Validate Variants" version="0.0.2">
   <description></description>
   <requirements>
       <requirement type="package" version="2.1">gatk</requirement>